add other metagenomics again

camilogarciabotero · Sep 9, 2022 · 2f9ff5b · 2f9ff5b
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diff --git a/_quarto.yml b/_quarto.yml
@@ -53,7 +53,6 @@ book:
         - chs-sequence-analysis/introduction-to-sequence-analysis.qmd
         - chs-sequence-analysis/sanger-analysis.qmd
         - chs-sequence-analysis/sequence-alignments.qmd
-        # - chs-sequence-analysis/phylogenetic-reconstructions.qmd
         - chs-sequence-analysis/NGS-TGS-principles.qmd
     - part: "Phylogenetics"
       chapters:
@@ -65,6 +64,10 @@ book:
         - chs-genomics/genome-annotation.qmd
         - chs-genomics/variant-calling-analysis.qmd
         - chs-genomics/functional-genomics.qmd
+        - chs-genomics/comparative-genomics.qmd
+    - part: "Metagenomics"
+      chapters:  
+        - chs-metagenomics/metagenomic-sequencing.qmd
     - part: "Structural bioinformatics"
       chapters:
         - chs-bio-structural/intro-structural-bioinfo.qmd

diff --git a/chs-genomics/comparative-genomics.qmd b/chs-genomics/comparative-genomics.qmd
@@ -0,0 +1,10 @@
+# Comparative genomics {#sec-comparative-genomics}
+
+## Genome mapping 
+
+## Whole genome comparisons
+
+mummer
+mauve
+mmseq
+
diff --git a/chs-phylogenetics/comparative-phylogenetics.qmd b/chs-phylogenetics/comparative-phylogenetics.qmd
@@ -0,0 +1 @@
+# Comparative phylogenetics {#sec-comparative-phylogenetics}
diff --git a/chs-phylogenetics/phylogenomics.qmd b/chs-phylogenetics/phylogenomics.qmd
@@ -0,0 +1 @@
+# Phylogenomics {#sec-phylogenomics}
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		@@ -0,0 +1 @@
		# Comparative phylogenetics {#sec-comparative-phylogenetics}