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# Polyquant Computed Tomography Reconstruction Toolbox | ||
This Matlab toolbox allows direct quantitative reconstruction from polyenergetic X-ray computed tomography (CT) measurements. We hope you find it useful and welcome any feedback. | ||
# Polyquant CT Reconstruction Toolbox | ||
This Matlab toolbox allows direct quantitative reconstruction from polyenergetic X-ray computed tomography (CT) measurements. We hope you find it useful and welcome any feedback or questions [[email protected]]. | ||
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## Features | ||
- Allows quantitative reconstruction into **electron density**, mass density, proton stopping power, quasi-monoenergetic and more. | ||
- Iterative statistical reconstruction under Poisson noise. | ||
- Designed for use with [Michigan Image Reconstruction Toolbox](https://web.eecs.umich.edu/~fessler/code) operators. | ||
- Metal artefact compensation and correction. | ||
- Designed for use with [Michigan Image Reconstruction Toolbox](https://web.eecs.umich.edu/~fessler/code) operators: ensure the toolbox is in your path (by running its 'setup.m') before running these demos. | ||
- Non-negative total variation (TV) reguarisation in 2D and 3D, adapted from [UNLocBoX](https://epfl-lts2.github.io/unlocbox-html/). | ||
- Integrated polyenergetic scatter estimation and mitigation. | ||
- Accelerated ordered sub-sets algorithm with bit-reversal ordering. | ||
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- [Jonathan H Mason et al 2017 Phys. Med. Biol. 62 8739](https://doi.org/10.1088/1361-6560/aa9162) | ||
- [Jonathan H Mason et al 2018 Phys. Med. Biol. 63 225001](https://doi.org/10.1088/1361-6560/aae794) | ||
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For more details, extensions and its use in radiotherapy, you can read my thesis: | ||
For more details, extensions and its use in radiotherapy, you can read the thesis: | ||
[Quantitative cone-beam computed tomography reconstruction for radiotherapy planning](http://hdl.handle.net/1842/33193 ) | ||
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## Acknowledgements | ||
Thanks to Mike Davies, Bill Nailon and Alessandro Perelli for their collaboration and supervision during the development of this work. Another thanks to Alessandro for kindly reviewing this code. |