added pre-commit setup (#109)

.github/PULL_REQUEST_TEMPLATE.md

@@ -2,4 +2,4 @@
 
  - [ ] Closes #xxxx
  - [ ] Tests added
- - [ ] Fully documented, including `docs/history.rst` for all changes and `docs/rioxarray.rst` for new API
+ - [ ] Fully documented, including `docs/history.rst` for all changes and `docs/rioxarray.rst` for new API

.isort.cfg

@@ -0,0 +1,6 @@
+[settings]
+line_length=88
+multi_line_output=3
+known_third_party=PIL,affine,dask,mock,numpy,pyproj,pytest,rasterio,scipy,setuptools,xarray
+known_first_party=rioxarray,test
+include_trailing_comma=true

.pre-commit-config.yaml

@@ -0,0 +1,30 @@
+repos:
+    -   repo: https://github.com/pre-commit/pre-commit-hooks
+        rev: v2.5.0
+        hooks:
+        -   id: check-yaml
+        -   id: end-of-file-fixer
+        -   id: trailing-whitespace
+    -   repo: https://github.com/psf/black
+        rev: 19.10b0
+        hooks:
+        -   id: black
+    -   repo: https://github.com/asottile/seed-isort-config
+        rev: v2.1.0
+        hooks:
+        -   id: seed-isort-config
+    -   repo: https://github.com/timothycrosley/isort
+        rev: 4.3.21
+        hooks:
+        -   id: isort
+            args: [setup.py, rioxarray/, test/, docs/]
+    -   repo: https://github.com/asottile/blacken-docs
+        rev: v1.6.0
+        hooks:
+        -   id: blacken-docs
+            args: [--skip-errors]
+    -   repo: https://gitlab.com/pycqa/flake8
+        rev: 3.7.9
+        hooks:
+        -   id: flake8
+            args: [--max-line-length, '88', --ignore, "E225,W503,C408"]

.travis.yml

@@ -68,4 +68,4 @@ script:
 
 after_success:
   # Coveralls stats for code coverage
-  - coveralls
+  - coveralls

CODE_OF_CONDUCT.rst

@@ -51,4 +51,3 @@ This Code of Conduct is adapted from the Contributor Covenant_, version 1.4, ava
 
 .. _Contributor Covenant:  http://contributor-covenant.org
 .. _version:  http://contributor-covenant.org/version/1/4/
-

CONTRIBUTING.rst

@@ -68,30 +68,39 @@ Ready to contribute? Here's how to set up `rioxarray` for local development.
 
     $ python -m venv rioxarray_env
     $ cd rioxarray/
-    $ python setup.py develop
+    $ pip install -e .[dev]
 
-4. Create a branch for local development::
+4. Setup pre-commit hooks::
+
+   $ pre-commit install
+   $ pre-commit autoupdate
+
+5. Create a branch for local development::
 
     $ git checkout -b name-of-your-bugfix-or-feature
 
    Now you can make your changes locally.
 
-5. When you're done making changes, check that your changes pass flake8, are black formatter,
+6. When you're done making changes, check that your changes pass flake8, are black formatter,
    and the tests pass::
 
-    $ flake8 rioxarray test
-    $ black --check .
-    $ python setup.py test or py.test
+    $ make check
+    $ make test
+
+   Or, if you cannot run makefile commands::
 
-   To get flake8 and black, just pip install them into your virtualenv.
+    $ flake8 --ignore=E731,W503,W504 --exclude --max-complexity 10 --max-line-length 88 rioxarray/
+    $ flake8 --max-line-length 88 tests/unit/ tests/functional/ tests/integration
+    $ black --target-version py36 --check .
+    $ py.test
 
-6. Commit your changes and push your branch to GitLab::
+7. Commit your changes and push your branch to GitLab::
 
     $ git add .
     $ git commit -m "Your detailed description of your changes."
     $ git push origin name-of-your-bugfix-or-feature
 
-7. Submit a pull request through the GitHub website.
+8. Submit a pull request through the GitHub website.
 
 Pull Request Guidelines
 -----------------------

LICENSE

@@ -13,7 +13,7 @@
    See the License for the specific language governing permissions and
    limitations under the License.
 
-   
+
                                  Apache License
                            Version 2.0, January 2004
                         http://www.apache.org/licenses/

LICENSE_datacube

@@ -11,4 +11,4 @@ Unless required by applicable law or agreed to in writing, software
 distributed under the License is distributed on an "AS IS" BASIS,
 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 See the License for the specific language governing permissions and
-limitations under the License.
+limitations under the License.

MANIFEST.in

@@ -9,4 +9,4 @@ recursive-exclude * __pycache__
 recursive-exclude * *.py[co]
 
 recursive-include docs *.rst *.ipynb conf.py Makefile make.bat *.jpg *.png *.gif
-prune docs/examples/.ipynb_checkpoints/
+prune docs/examples/.ipynb_checkpoints/

appveyor.yml

@@ -30,4 +30,4 @@ test_script:
   - python -m pytest --cov-report term-missing --cov=rioxarray
   - flake8 --ignore=E731,W503,W504 --exclude --max-complexity 10 --max-line-length 88 rioxarray/
   - flake8 --max-line-length 88 tests/unit/ tests/functional/ tests/integration
-  - black --check .
+  - black --check .

docs/examples/examples.rst

@@ -31,4 +31,4 @@ This page contains links to a collection of examples of how to use rioxarray.
     Converting NetCDF dataset array to GeoTiff <https://gis.stackexchange.com/a/329141/144357>
     How do I add projection to this NetCDF file? (Satellite) <https://gis.stackexchange.com/a/345697/144357>
     Create a new raster TIFF file which is masked based on the GeoJSON file <https://gis.stackexchange.com/a/346899/144357>
-    How to mask NetCDF time series data from a shapefile in Python? <https://gis.stackexchange.com/a/354798/144357>
+    How to mask NetCDF time series data from a shapefile in Python? <https://gis.stackexchange.com/a/354798/144357>

docs/history.rst

@@ -89,11 +89,11 @@ History
 
 0.0.8
 -----
-- Fix setting nodata in _add_attrs_proj (pull #30) 
+- Fix setting nodata in _add_attrs_proj (pull #30)
 
 0.0.7
 -----
-- Add option to do an inverted clip (pull #29) 
+- Add option to do an inverted clip (pull #29)
 
 0.0.6
 -----

docs/installation.rst

@@ -11,7 +11,7 @@ Stable release
 1. Use pip to install package from `PyPI <https://pypi.org/project/rioxarray/>`__:
 
   .. code-block:: bash
-    
+
       pip install rioxarray
 
 

docs/readme.rst

@@ -1 +1 @@
-.. include:: ../README.rst
+.. include:: ../README.rst

github_deploy_key_corteva_rioxarray.enc

@@ -1 +1 @@
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rioxarray/__init__.py

@@ -6,10 +6,10 @@
 __email__ = "[email protected]"
 
 import rioxarray.rioxarray  # noqa
+from rioxarray._version import __version__  # noqa
 
 try:
     # This requires xarray >= 0.12.3
     from rioxarray._io import open_rasterio  # noqa
 except ImportError:
     from xarray import open_rasterio  # noqa
-from rioxarray._version import __version__  # noqa

setup.py

@@ -38,6 +38,7 @@ def get_version():
         "flake8",
         "pylint",
         "isort",
+        "pre-commit",
     ]
 }
 extras_require["all"] = list(chain.from_iterable(extras_require.values()))

test/integration/test_integration_rioxarray.py

@@ -146,7 +146,7 @@ def _del_attr(input_xr, attr):
 
 
 @pytest.fixture(
-    params=[xarray.open_dataset, xarray.open_dataarray, rioxarray.open_rasterio,]
+    params=[xarray.open_dataset, xarray.open_dataarray, rioxarray.open_rasterio]
 )
 def modis_clip(request, tmpdir):
     return dict(

test/test_data/input/nonstandard_dim_geom.json

@@ -24,4 +24,4 @@
             ]
         ]
     ]
-}
+}