Omnibus PR: GitHub Actions CI, fix tests, reorganize docs, remove PyC…

…all/SymPy stuff (#184)

.github/workflows/CompatHelper.yml

@@ -1,19 +1,16 @@
 name: CompatHelper
-
 on:
   schedule:
-    - cron: '00 00 * * *'
-
+    - cron: 0 0 * * *
+  workflow_dispatch:
 jobs:
   CompatHelper:
     runs-on: ubuntu-latest
     steps:
-      - uses: julia-actions/setup-julia@latest
-        with:
-          version: 1.3
       - name: Pkg.add("CompatHelper")
         run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
       - name: CompatHelper.main()
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
         run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/TagBot.yml

@@ -1,11 +1,13 @@
 name: TagBot
 on:
   schedule:
-    - cron: 0 * * * *
+    - cron: 0 0 * * *
+  workflow_dispatch:
 jobs:
   TagBot:
     runs-on: ubuntu-latest
     steps:
       - uses: JuliaRegistries/TagBot@v1
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/ci.yml

@@ -0,0 +1,65 @@
+name: CI
+on:
+  pull_request:
+    branches:
+      - master
+  push:
+    branches:
+      - master
+    tags: '*'
+  schedule:
+    - cron: '44 9 16 * *' # run the cron job one time per month
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1.4'
+          - '1'
+          - 'nightly'
+        os:
+          - ubuntu-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: actions/cache@v1
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - uses: julia-actions/julia-buildpkg@latest
+      - uses: julia-actions/julia-runtest@latest
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v1
+        with:
+          file: lcov.info
+  docs:
+    name: Documentation
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: '1'
+      - run: |
+          julia --project=docs -e '
+            using Pkg
+            Pkg.develop(PackageSpec(path=pwd()))
+            Pkg.instantiate()'
+      - run: julia --project=docs docs/make.jl
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

.gitignore

@@ -1,9 +1,12 @@
-*.jl.cov
 *.jl.*.cov
+*.jl.cov
 *.jl.mem
-deps/deps.jl
-src/sandbox.jl
+.DS_Store
+/deps/deps.jl
+/docs/build/
+/src/sandbox.jl
 Manifest.toml
 Soss.code-workspace
+cache/
+example-*.md
 tracefile*.info
-cache/

CITATION.bib

@@ -2,7 +2,6 @@ @misc{Soss.jl
 	author  = {Chad Scherrer},
 	title   = {{Soss.jl}},
 	url     = {https://github.com/cscherrer/Soss.jl},
-	version = {v0.5.0},
 	year    = {2019},
 	month   = {9}
 }

LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2017 Chad Scherrer
+Copyright (c) 2020 Chad Scherrer
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

Project.toml

@@ -1,7 +1,7 @@
 name = "Soss"
 uuid = "8ce77f84-9b61-11e8-39ff-d17a774bf41c"
 author = ["Chad Scherrer <[email protected]>"]
-version = "0.13.1"
+version = "0.14.0-DEV"
 
 [deps]
 AdvancedHMC = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d"
@@ -23,7 +23,6 @@ MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
 MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca"
 NamedTupleTools = "d9ec5142-1e00-5aa0-9d6a-321866360f50"
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
-PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
@@ -36,7 +35,6 @@ SimplePosets = "b2aef97b-4721-5af9-b440-0bad754dc5ba"
 SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6"
 TransformVariables = "84d833dd-6860-57f9-a1a7-6da5db126cff"
 
 [compat]
@@ -56,7 +54,6 @@ MLStyle = "0.3, 0.4"
 MacroTools = "0.5"
 MonteCarloMeasurements = "0.6,0.7, 0.8, 0.9"
 NamedTupleTools = "0.12, 0.13"
-PyCall = "1.91"
 RecipesBase = "0.7,0.8, 1.0"
 Reexport = "0.2"
 Requires = "1.0"
@@ -67,6 +64,16 @@ SimplePartitions = "0.2, 0.3"
 SimplePosets = "0.0, 0.1"
 SpecialFunctions = "0.10"
 StatsFuns = "0.9"
-SymPy = "1.0"
 TransformVariables = "0.3"
-julia = "^1.3"
+julia = "1.4"
+
+[extras]
+Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+Literate = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
+Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3"
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Documenter", "Literate", "Plots", "Random", "StableRNGs", "Test"]