Add new Embryoid body tutorial including trained model and data loadi…

…ng in EmbryoidBody_TrajectoryInference.ipynb.
diego-escobedo · Mar 16, 2021 · 007f313 · 007f313
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diff --git a/data/eb_genes.txt b/data/eb_genes.txt
@@ -0,0 +1,68 @@
+TAL1
+CD34
+PECAM1
+HOXD1
+HOXB4
+HAND1
+GATA6
+GATA5
+TNNT2
+TBX18
+TBX15
+PDGFRA
+SIX2
+TBX5
+WT1
+MYC
+LEF1
+SOX10
+FOXD3
+PAX3
+SOX9
+HOXA2
+OLIG3
+ONECUT2
+KLF7
+ONECUT1
+MAP2
+ISL1
+DLX1
+HOXB1
+NR2F1
+LMX1A
+DMRT3
+OLIG1
+PAX6
+NPAS1
+SOX1
+NKX2-8
+EN2
+ZBTB16
+SOX17
+FOXA2
+EOMES
+T
+GATA4
+ASCL2
+CDX2
+ARID3A
+KLF5
+RFX6
+NKX2-1
+SOX15
+TP63
+GATA3
+SATB1
+CER1
+LHX5
+SIX3
+LHX2
+GLI3
+SIX6
+NES
+GBX2
+ZIC2
+NANOG
+MIXL1
+OTX2
+POU5F1
diff --git a/notebooks/EB-Eval.ipynb b/notebooks/EB-Eval.ipynb
-Original file line number
+Diff line change
@@ -0,0 +1,68 @@
+    TAL1
+    CD34
+    PECAM1
+    HOXD1
+    HOXB4
+    HAND1
+    GATA6
+    GATA5
+    TNNT2
+    TBX18
+    TBX15
+    PDGFRA
+    SIX2
+    TBX5
+    WT1
+    MYC
+    LEF1
+    SOX10
+    FOXD3
+    PAX3
+    SOX9
+    HOXA2
+    OLIG3
+    ONECUT2
+    KLF7
+    ONECUT1
+    MAP2
+    ISL1
+    DLX1
+    HOXB1
+    NR2F1
+    LMX1A
+    DMRT3
+    OLIG1
+    PAX6
+    NPAS1
+    SOX1
+    NKX2-8
+    EN2
+    ZBTB16
+    SOX17
+    FOXA2
+    EOMES
+    T
+    GATA4
+    ASCL2
+    CDX2
+    ARID3A
+    KLF5
+    RFX6
+    NKX2-1
+    SOX15
+    TP63
+    GATA3
+    SATB1
+    CER1
+    LHX5
+    SIX3
+    LHX2
+    GLI3
+    SIX6
+    NES
+    GBX2
+    ZIC2
+    NANOG
+    MIXL1
+    OTX2
+    POU5F1