DeepSuccin : Prediction of protein succinylation sites with deep learning model. Devoloped in KC lab.
Backend = Tensorflow
Keras
Numpy
Biopython
Sklearn
Imblearn
Dataset is in FASTA format which includes protein window size of 33. Test dataset is provided. There are two dataset for positive and negative examples.
The best model has been included. Download all 4 parts and extracting the 1st part will automatically extract other three. The final file is named model.h5
With all the prerequisite installed, run -> model_load.py
The format should be same as the test dataset which is basically FASTA format. This model works for window size 33 only.
Feel free to contact us if you need any help : [email protected]