Use API endpoints in frontend

[NoraKri]

Aim of the PR

This PR fixes AB#218921

After creating an API for CRUD-operations against the triplestore, we wish to use this API in the frontend instead of directly communicating with the triplestore.

Implementation

NOTE: The table is now broken, since those requests are handled by the frontend. Will not be fixed until endpoints are in place for tables

• Api.ts: This files handles request setup and sends API requests. Right now, there is no ability to rename/change color of a commissioning package, so this endpoint sits unfinished.
• Triplestore.ts: This file will be removed when all functionality is covered by the API. For now, the unused functions are removed from this file.
• CommissioningPackageHandler.tsx: A lot of the logic previously contained in this file is now handled by the API.

Type of change

• Bug fix
• New feature
• Breaking change
• This change requires a documentation update

How Has This Been Tested?

Tested in demo that creation/deletion of package and selection of boundary and internal in multiple commissioning packages works as expected.
Tested the endpoints in Swagger to verify that the changes are updated.
Tested in RdFox to see if correct nodes are marked as boundary/internal.

Additional Changes

Some API fixes, docker setup fixes and datalog improvements needed to be made for this PR to work as well.
Port 5000 is stupidly used by Apple AirPlay, causing issues when running the dockerfiles on mac. Port is changed to 6000 for this reason.

Updates to Datalog rule, the following rule is added:
comp:isInPackage [?node, ?package] :-
comp:isSelectedInternalOf[?node, ?package] .

We had no predicate for stating that something is a selected internal - only that something was in the package. We need to be able to differentiate the internals from the selected internals, hence the new predicate comp:isSelectedInternalOf was introduced. The datalog rules is extended to make it easier to handle the selectedInternals, when a node is selected to be an internal node this also means that this node should be in the commissioning package. The new datalog rule makes sure that this happens automatically.

[markus-ap]

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[eoye]

Great job, this looks very good! Some small comments (I tried making code suggestions on all of them to make it easier).
I tested the Dexpi demo and it works as expected 😄