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Merge branch 'develop' of https://github.com/hms-dbmi/clodius into de…
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scottx611x committed Feb 3, 2017
2 parents 7c4ab59 + 538c9cc commit 28f03b2
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17 changes: 1 addition & 16 deletions README.md
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Expand Up @@ -276,22 +276,8 @@ Or, for a more realistic data set:
OUTPUT_DIR=output; rm -rf $OUTPUT_DIR; python scripts/make_tiles.py -o $OUTPUT_DIR -v count -p pos1,pos2 -c pos1,pos2,count -i count -r 5000 -b 128 --max-zoom 14 data/128k.raw; du --max-depth=0 -h output; find output/ | wc -l;
```

The parameters:


## Tests

There are a limited number of tests provided.

```
nosetests -s test/
```

## Examples




## Profiling

To see where this script spends the majority of the time, profile it using:
Expand All @@ -316,8 +302,7 @@ To display it at 1K (~2 ^ 10) base pairs per pixel, we would need 14 zoom levels
## Testing

```
python setup.py build_ext --inplace
nosetests test
nosetests
```

## Push new changes to pypi
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