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igemsoftware2017 · Sep 2, 2017 · 4ba2b2e · 4ba2b2e
1 parent 8f5ac08
commit 4ba2b2e
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Showing 65 changed files with 86 additions and 27 deletions.
diff --git a/.DS_Store b/.DS_Store
diff --git a/.gitignore b/.gitignore
@@ -94,3 +94,10 @@ static/project_page/devices_img/
 
 #vscode
 /.vscode/*
+
+#conf
+bio_nginx.conf
+gunicorn.conf.py
+
+#log
+log/*
diff --git a/BioDesignVer/__pycache__/__init__.cpython-35.pyc b/BioDesignVer/__pycache__/__init__.cpython-35.pyc
diff --git a/BioDesignVer/__pycache__/settings.cpython-35.pyc b/BioDesignVer/__pycache__/settings.cpython-35.pyc
diff --git a/BioDesignVer/__pycache__/urls.cpython-35.pyc b/BioDesignVer/__pycache__/urls.cpython-35.pyc
diff --git a/BioDesignVer/__pycache__/wsgi.cpython-35.pyc b/BioDesignVer/__pycache__/wsgi.cpython-35.pyc
diff --git a/BioDesignVer/settings.py b/BioDesignVer/settings.py
@@ -25,7 +25,7 @@
 # SECURITY WARNING: don't run with debug turned on in production!
 DEBUG = True
 
-ALLOWED_HOSTS = []
+ALLOWED_HOSTS = ['*',]
 
 # Application definition
 
@@ -40,7 +40,8 @@
     'projectManage',
     'design',
     'system',
-    'geneRelationship'
+    'geneRelationship',
+    'gunicorn'
 ]
 
 MIDDLEWARE = [
@@ -82,7 +83,7 @@
         'ENGINE': 'django.db.backends.mysql',
         'NAME': 'biodesignver',
         'USER': 'root',
-        'PASSWORD': 'qaz123',
+        'PASSWORD': '',
         'HOST': '',
         'PORT': '3306',
     }
@@ -128,4 +129,5 @@
 STATIC_URL = '/static/'
 STATICFILES_DIRS = (
         os.path.join(BASE_DIR, 'static'),
-)
+)
+STATIC_ROOT = '/root/HFUT-2017/static'
diff --git a/accounts/__pycache__/__init__.cpython-35.pyc b/accounts/__pycache__/__init__.cpython-35.pyc
diff --git a/accounts/__pycache__/admin.cpython-35.pyc b/accounts/__pycache__/admin.cpython-35.pyc
diff --git a/accounts/__pycache__/models.cpython-35.pyc b/accounts/__pycache__/models.cpython-35.pyc
diff --git a/accounts/__pycache__/urls.cpython-35.pyc b/accounts/__pycache__/urls.cpython-35.pyc
diff --git a/accounts/__pycache__/views.cpython-35.pyc b/accounts/__pycache__/views.cpython-35.pyc
diff --git a/accounts/migrations/__pycache__/0001_initial.cpython-35.pyc b/accounts/migrations/__pycache__/0001_initial.cpython-35.pyc
diff --git a/accounts/migrations/__pycache__/__init__.cpython-35.pyc b/accounts/migrations/__pycache__/__init__.cpython-35.pyc
diff --git a/accounts/views.py b/accounts/views.py
@@ -19,7 +19,9 @@
 
 def register(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		userName = noneIfEmptyString(data['username'])
 		if not userName:
 			raise myError('The username can\'t be none.' )
@@ -72,7 +74,9 @@ def getLogin(request):
 
 def login(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		user = data['username']
 		password = data['password']
 		customerUser = User()

diff --git a/design/__pycache__/__init__.cpython-35.pyc b/design/__pycache__/__init__.cpython-35.pyc
diff --git a/design/__pycache__/admin.cpython-35.pyc b/design/__pycache__/admin.cpython-35.pyc
diff --git a/design/__pycache__/getImage.cpython-35.pyc b/design/__pycache__/getImage.cpython-35.pyc
diff --git a/design/__pycache__/models.cpython-35.pyc b/design/__pycache__/models.cpython-35.pyc
diff --git a/design/__pycache__/recommend.cpython-35.pyc b/design/__pycache__/recommend.cpython-35.pyc
diff --git a/design/__pycache__/search_part.cpython-35.pyc b/design/__pycache__/search_part.cpython-35.pyc
diff --git a/design/__pycache__/urls.cpython-35.pyc b/design/__pycache__/urls.cpython-35.pyc
diff --git a/design/__pycache__/views.cpython-35.pyc b/design/__pycache__/views.cpython-35.pyc
diff --git a/design/migrations/__pycache__/__init__.cpython-35.pyc b/design/migrations/__pycache__/__init__.cpython-35.pyc
diff --git a/design/views.py b/design/views.py
@@ -20,7 +20,9 @@
 
 def getChain(request):
     try:
-        data = json.loads(request.body)
+        body = request.body
+        body = body.decode('utf-8')
+        data = json.loads(body)
         try:
             token = Token.objects.filter(token=data['token']).first()
             user = token.user
@@ -77,7 +79,9 @@ def getChain(request):
 
 def searchParts(request):
     try:
-        data = json.loads(request.body)
+        body = request.body
+        body = body.decode('utf-8')
+        data = json.loads(body)
         try:
             token = Token.objects.filter(token=data['token']).first()
             user = token.user
@@ -118,7 +122,9 @@ def searchParts(request):
 
 def getParts(request):
     try:
-        data = json.loads(request.body)
+        body = request.body
+        body = body.decode('utf-8')
+        data = json.loads(body)
         try:
             token = Token.objects.filter(token=data['token']).first()
             user = token.user
@@ -159,7 +165,9 @@ def getParts(request):
 
 def updateChain(request):
     try:
-        data = json.loads(request.body)
+        body = request.body
+        body = body.decode('utf-8')
+        data = json.loads(body)
         try:
             token = Token.objects.filter(token=data['token']).first()
             user = token.user
@@ -211,7 +219,9 @@ def updateChain(request):
 
 def getARecommend(request):
     try:
-        data = json.loads(request.body)
+        body = request.body
+        body = body.decode('utf-8')
+        data = json.loads(body)
         token = Token()
         token = Token.objects.filter(token=data.data['token']).first()
         chainStr = data.data['seq']
@@ -253,7 +263,9 @@ def getARecommend(request):
 
 def getMRecommend(request):
     try:
-        data = json.loads(request.body)
+        body = request.body
+        body = body.decode('utf-8')
+        data = json.loads(body)
         try:
             token = Token.objects.filter(token=data['token']).first()
             user = token.user
@@ -300,7 +312,9 @@ def getMRecommend(request):
 
 def getResultImage(request):
     try:
-        data = json.loads(request.body)
+        body = request.body
+        body = body.decode('utf-8')
+        data = json.loads(body)
         try:
             token = Token.objects.filter(token=data['token']).first()
             user = token.user

diff --git a/geneRelationship/__pycache__/__init__.cpython-35.pyc b/geneRelationship/__pycache__/__init__.cpython-35.pyc
diff --git a/geneRelationship/__pycache__/admin.cpython-35.pyc b/geneRelationship/__pycache__/admin.cpython-35.pyc
diff --git a/geneRelationship/__pycache__/models.cpython-35.pyc b/geneRelationship/__pycache__/models.cpython-35.pyc
diff --git a/geneRelationship/__pycache__/search_relation.cpython-35.pyc b/geneRelationship/__pycache__/search_relation.cpython-35.pyc
diff --git a/geneRelationship/__pycache__/urls.cpython-35.pyc b/geneRelationship/__pycache__/urls.cpython-35.pyc
diff --git a/geneRelationship/__pycache__/views.cpython-35.pyc b/geneRelationship/__pycache__/views.cpython-35.pyc
diff --git a/geneRelationship/migrations/__pycache__/0001_initial.cpython-35.pyc b/geneRelationship/migrations/__pycache__/0001_initial.cpython-35.pyc
diff --git a/geneRelationship/migrations/__pycache__/__init__.cpython-35.pyc b/geneRelationship/migrations/__pycache__/__init__.cpython-35.pyc
diff --git a/geneRelationship/views.py b/geneRelationship/views.py
@@ -16,7 +16,9 @@
 
 def randomGene(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -66,7 +68,9 @@ def randomGene(request):
 
 def searchGenes(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -104,7 +108,9 @@ def searchGenes(request):
 
 def getGeneInfo(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -143,7 +149,9 @@ def getGeneInfo(request):
 
 def getRelatedGene(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -184,7 +192,9 @@ def getRelatedGene(request):
 
 def getRelatedPaper(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -221,7 +231,9 @@ def getRelatedPaper(request):
 
 def getOneSentence(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -259,7 +271,9 @@ def getOneSentence(request):
 
 def getThreeSentences(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -297,7 +311,9 @@ def getThreeSentences(request):
 
 def getRelatedDisease(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user

diff --git a/projectManage/__pycache__/__init__.cpython-35.pyc b/projectManage/__pycache__/__init__.cpython-35.pyc
diff --git a/projectManage/__pycache__/admin.cpython-35.pyc b/projectManage/__pycache__/admin.cpython-35.pyc
diff --git a/projectManage/__pycache__/models.cpython-35.pyc b/projectManage/__pycache__/models.cpython-35.pyc
diff --git a/projectManage/__pycache__/urls.cpython-35.pyc b/projectManage/__pycache__/urls.cpython-35.pyc
diff --git a/projectManage/__pycache__/views.cpython-35.pyc b/projectManage/__pycache__/views.cpython-35.pyc
diff --git a/projectManage/migrations/__pycache__/0001_initial.cpython-35.pyc b/projectManage/migrations/__pycache__/0001_initial.cpython-35.pyc
diff --git a/projectManage/migrations/__pycache__/__init__.cpython-35.pyc b/projectManage/migrations/__pycache__/__init__.cpython-35.pyc
diff --git a/static/.DS_Store b/static/.DS_Store
diff --git a/static/design/.DS_Store b/static/design/.DS_Store
diff --git a/static/design/img/.DS_Store b/static/design/img/.DS_Store
diff --git a/static/fonts/.DS_Store b/static/fonts/.DS_Store
diff --git a/static/gene_info/.DS_Store b/static/gene_info/.DS_Store
diff --git a/static/gene_page/.DS_Store b/static/gene_page/.DS_Store
diff --git a/static/icons/.DS_Store b/static/icons/.DS_Store
diff --git a/static/project_page/.DS_Store b/static/project_page/.DS_Store
diff --git a/static/register/.DS_Store b/static/register/.DS_Store
diff --git a/static/relationship_detail/.DS_Store b/static/relationship_detail/.DS_Store
diff --git a/static/system_page/.DS_Store b/static/system_page/.DS_Store
diff --git a/system/__pycache__/__init__.cpython-35.pyc b/system/__pycache__/__init__.cpython-35.pyc
diff --git a/system/__pycache__/admin.cpython-35.pyc b/system/__pycache__/admin.cpython-35.pyc
diff --git a/system/__pycache__/fasta_reader.cpython-35.pyc b/system/__pycache__/fasta_reader.cpython-35.pyc
diff --git a/system/__pycache__/gene.cpython-35.pyc b/system/__pycache__/gene.cpython-35.pyc
diff --git a/system/__pycache__/models.cpython-35.pyc b/system/__pycache__/models.cpython-35.pyc
diff --git a/system/__pycache__/urls.cpython-35.pyc b/system/__pycache__/urls.cpython-35.pyc
diff --git a/system/__pycache__/views.cpython-35.pyc b/system/__pycache__/views.cpython-35.pyc
diff --git a/system/migrations/__pycache__/__init__.cpython-35.pyc b/system/migrations/__pycache__/__init__.cpython-35.pyc
diff --git a/system/views.py b/system/views.py
@@ -15,7 +15,9 @@
 
 def searchCompound(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -52,7 +54,9 @@ def searchCompound(request):
 
 def getCompound(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -89,7 +93,9 @@ def getCompound(request):
 
 def getGene(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user
@@ -126,7 +132,9 @@ def getGene(request):
 
 def getRelatedCompound(request):
 	try:
-		data = json.loads(request.body)
+		body = request.body
+		body = body.decode('utf-8')
+		data = json.loads(body)
 		try:
 			token = Token.objects.filter(token=data['token']).first()
 			user = token.user

diff --git a/tranCompoundDataToES.py b/tranCompoundDataToES.py
@@ -29,8 +29,16 @@ def saveInfoToES(es, compound_list):
 def mainFunc():
     es = Elasticsearch()
     print('process started')
-    compound_list = compound.objects.all()[1000:5000]
-    saveInfoToES(es, compound_list)
+    x = 0
+    y = 1000
+    total = compound.objects.count()
+    while y < total:
+        compound_list = compound.objects.all()[x:y]
+        saveInfoToES(es, compound_list)
+        x = y
+        y = y+1000
+        if y > total:
+            y = total
     print('process ended')
 
 if __name__ == '__main__':

diff --git a/utils/__pycache__/__init__.cpython-35.pyc b/utils/__pycache__/__init__.cpython-35.pyc
diff --git a/utils/functionTools/__pycache__/__init__.cpython-35.pyc b/utils/functionTools/__pycache__/__init__.cpython-35.pyc
diff --git a/utils/functionTools/__pycache__/generalFunction.cpython-35.pyc b/utils/functionTools/__pycache__/generalFunction.cpython-35.pyc