v0.3.0

Enhancements

• Updated the package docs and vignettes with the new way of specifying data for teal::init(). The data argument will accept a teal_data object

Bug fixes

• Outlier labels no longer appear out of bounds in tm_a_regression.
• Fixed a bug in tm_outliers when changing the selected variable would cause a popup.

Miscellaneous

• Removed teal.slice dependencies.
• Specified minimal version of package dependencies.

What's Changed

• Fixing inconsistent Styling and Layout for 'Show Warning' and 'Show R Code' Buttons by @kartikeyakirar in #573
• Unified Visual Consistency for UI Components#564 by @kartikeyakirar in #565
• Workflow propagation by @walkowif in #579
• Add tables to show-r-code in distribution, scatterplot and outliers modules by @averissimo in #574
• 566 Consistent white background for modules by @kartikeyakirar in #581
• 556 Longer labels for x axis in the tm_variable_browser() are not fully displayed by @kartikeyakirar in #580
• Only retain hard dependencies from pre-commit hooks by @averissimo in #582
• Adds min package version by @averissimo in #538
• 198 Include user's card labels when generating the report by @kartikeyakirar in #584
• Replace the qplot function with ggplot equivalent by @vedhav in #586
• Update docs to use the new teal_data instead of TealData by @vedhav in #597
• Apply facet rule only when supplied by @vedhav in #599
• Make sure to pass a data.frame into teal::validate_has_data by @vedhav in #601
• tdata to teal_data by @gogonzo in #603
• fix resolve_delayed by @gogonzo in #618
• Workflow propagation by @walkowif in #617
• 619 update modules to handle default datanames when datanames = "all" by @kartikeyakirar in #621
• 507 reevaluate variable_types by @chlebowa in #622
• Fix pkgdown redirect by @vedhav in #630
• Propagate files from insightsengineering/.github by @insights-engineering-bot in #631
• [skip actions] Propagate files from insightsengineering/.github by @insights-engineering-bot in #632
• 635 remove test theme by @chlebowa in #636
• fix nolint syntax by @chlebowa in #638
• 29 add non-cdisc examples to the modules by @chlebowa in #651
• Fix the silent error in tm_a_pca by @vedhav in #688
• Remove the internal function var_labels in favour of teal.data::col_labels by @vedhav in #690
• tm_g_regression labels are no longer allowed out of bounds by @averissimo in #675
• Fix factors crash in tm_g_association by @vedhav in #692
• Fixes popup dialog that keeps appearing when variable is changed on tm_outliers by @averissimo in #693
• Store the user selections so our default selection logic can be applied by @vedhav in #699
• 624 PACKAGE LEVEL pre-release activities by @m7pr in #639
• [skip vbump] upversion to 0.3.0 by @donyunardi in #704

Full Changelog: v0.2.16...v0.3.0

v0.2.16

Breaking changes

• Replaced chunks with simpler qenv class.
• Replaced datasets argument containing FilteredData with the new arguments data (tdata object) and filter_panel_api (FilterPanelAPI).

Enhancements

• Added parent_dataname argument to tm_variable_browser and tm_missing_data to allow specification of parent dataset for these modules.
• Improved UI labels and plot panel title in tm_g_association.
• Added inputs tm_variable_browser module for text size and plot theme.
• Forced ggplot theme to be always selected in all modules.
• Updated encodings input checks to use shinyvalidate::InputValidator instead of shiny::validate for better UI experience.

Bug fixes

• Fixed a bug in tm_g_scatterplot when selected x and y facets were the same.
• Fixed a bug in tm_g_distribution to plot the theoretical distribution with newer ggplot2 version.
• Fixed a bug in tm_g_bivariate when adding lines checkbox was available if one of x or y was deselected.
• Fixed a bug in tm_variable_browser when changing filters would reset the selected variable to the first on the list.

Miscellaneous

• Removed scda package dependency from examples.
• Replaced deprecated ggplot2 functions ..count.., ..density.. and ..prop...
• Version bump on forcats dependency.

What's Changed

• [skip vbump] Dev version with 9xxx by @arkadiuszbeer in #481
• scda.2022 by @nikolas-burkoff in #483
• Teal refactor by @nikolas-burkoff in #485
• Add coverage badge by @walkowif in #486
• Unhelpful title in tm_g_association by @chlebowa in #487
• Enable checks for workflow_dispatch event by @walkowif in #488
• [UAT] scale text on the variable browser plot with the plot hieght and width #312 by @chlebowa in #490
• add missing utils prefix by @chlebowa in #492
• 376 facet error@main by @BLAZEWIM in #494
• hide theoretical distribution by @mhallal1 in #496
• Badges and contribution guidelines by @insights-engineering-bot in #497
• fix bug by @mhallal1 in #502
• make themes non-optional by @chlebowa in #504
• add shinyvalidate to tmg by @mhallal1 in #498
• check to assert by @pawelru in #512
• clean up by @chlebowa in #513
• Update check as-cran and default landing page by @walkowif in #514
• Update rtables staged dep by @edelarua in #517
• add teal.gallery ref to readme by @pawelru in #519
• remove deprecated fun; vbump dep by @pawelru in #515
• make count as globalVariables by @donyunardi in #525
• 523 bugfix categorical var@main by @BLAZEWIM in #524
• Workflow updates by @walkowif in #522
• Update workflows by @walkowif in #526
• reduce the amount of spelling issues / WORDLIST by @m7pr in #528
• Workflow propagations by @walkowif in #531
• extend examples timing threshold to 11 seconds by @m7pr in #533
• 521 documentation review before the release by @m7pr in #530
• Decoupled scda by @kartikeyakirar in #534
• Move TealReportCard to teal by @gogonzo in #535
• empty by @gogonzo in #537
• Update install by @gogonzo in #539
• 84 qenv prints plots to the device when running shiny app by @kartikeyakirar in #540
• propagate argument name change in teal::module by @chlebowa in #541
• Revert square bracket@main by @gogonzo in #553
• [Bug]: plots from tm_g_scatterplot and tm_a_regression modules print on IDE 554 by @kartikeyakirar in #555
• 545 Keep selected variable in var browser as filters are changed by @averissimo in #549
• 561 Allow the selection of a categorical variable in tm_outliers by @averissimo in #562
• 559 Change order of Show R code/Show warnings buttons to be consistent with other modules by @averissimo in #563
• 570 horizontal lines by @chlebowa in #572
• release 0.2.16 [skip vbump] [skip spelling] by @donyunardi in #576

New Contributors

• @walkowif made their first contribution in #486
• @BLAZEWIM made their first contribution in #494
• @donyunardi made their first contribution in #525
• @m7pr made their first contribution in #528
• @kartikeyakirar made their first contribution in #534
• @averissimo made their first contribution in #549

Full Changelog: v0.2.15...v0.2.16

v0.2.15

Enhancements

• Added the teal.reporter functionality to all modules.
• Implemented nestcolor in the examples, refactored tm_a_pca and tm_missing_data to allow using nestcolor.
• Added log transformation options to tm_g_scatterplot.
• Added server_rendering flag to tm_data_table to control whether the table is rendered server or client side.

Bug fixes

• Fixed the overflow of very wide tm_a_pca tables.
• Fixed the join type functionality in tm_t_crosstable.
• Fixed a bug in tm_missing_data when selecting only variables with missings.
• Fixed a bug in tm_missing_data when using any_na.

Miscellaneous

• Moved packages only used in one module from Imports to Suggests in the DESCRIPTION file.
• Moved magrittr package from Depends to Imports in the DESCRIPTION file.

What's Changed

• fix news by @gogonzo in #413
• Contribution guide updates by @insights-engineering-bot in #415
• remove datasets$get_data_attr call by @gogonzo in #417
• docs: replaced github links with pkgdown links by @kpagacz in #418
• add reporter to modules by @mhallal1 in #422
• DESC and README by @denisovan31415 in #425
• Update Rbuildignore and add auto-updates by @insights-engineering-bot in #426
• update desc file by @nikolas-burkoff in #427
• Update pre-commit config to detect _pkgdown.y[a]ml by @insights-engineering-bot in #429
• 416 Implement nestcolor in TMG by @edelarua in #428
• Update font awesome icon labels for FA 6 by @cicdguy in #433
• remove filtered by @nikolas-burkoff in #431
• reporter cleaning by @mhallal1 in #430
• Update documentation workflow by @insights-engineering-bot in #435
• tmg css by @Polkas in #432
• Merge pre-release to main by @cicdguy in #441
• add log transformation for scatterplot by @nikolas-burkoff in #448
• server_rendering argument to tm_data_table by @nikolas-burkoff in #450
• fix join_fun crosstable by @Polkas in #452
• Update check.yaml by @arkadiuszbeer in #443
• R CMD check fixes by @mhallal1 in #457
• reduce imports by @mhallal1 in #458
• Update tm_missing_data.R by @Polkas in #464
• tmg - bs345 by @Polkas in #454
• Removing if condition for by @arkadiuszbeer in #455
• Update tm_g_distribution.R by @nikolas-burkoff in #472
• tm_missing_data: add dataname to report by @mhallal1 in #473
• allow easy close for front page module by @nikolas-burkoff in #475
• NEWS by @mhallal1 in #474
• Update tm_missing_data.R by @Polkas in #479
• [skip vbump] Release for version 0.2.15 by @insights-engineering-bot in #480

New Contributors

• @edelarua made their first contribution in #428

Full Changelog: v0.2.14...v0.2.15

v0.2.14

Enhancements

• New teal module tm_front_page to simplify creating a front page for teal apps.
• Added a slider widget to control the font size of the label in tm_g_scatterplot.
• Output integers without decimal places when selecting points in tm_g_scatterplot.
• Improved the names of the code chunks shown in Debug Info.
• Improved a validation message when the number of regressors is too big in tm_a_regression.R.

Bug fixes

• Fixed a wrong validation in tm_a_pca.
• Fixed a crash when deselecting the categorical factor in tm_outliers.

Miscellaneous

• Added a template to the pkgdown site.
• Updated package authors.

v0.2.12

Enhancements

• Added support for logging with the logger package and added info level logs upon initialization of a module.
• Added support for custom arguments for ggplot2::labs and ggplot2::theme in plot based modules.
• Added support for custom arguments for rtables::basic_table in tm_t_crosstable.
• Updated tm_outliers, tm_g_scatterplotmatrix, tm_g_association, and tm_t_crosstable modules to adopt the new teal.devel::data_merge_srv and teal.devel::data_extract_multiple_srv modules.
• Distinguished bars representing NA in plot depicting counts of tm_variable_browser with a different color fill.
• Modified the summary statistics table for numeric columns in tm_variable_browser to reflect the plot after outliers are removed.
• Added an option to remove missing values in a tm_variable_browser histogram for factor like variables.
• Added ability to sort by Variable and Type in tm_variable_browser by separating the variable type icons into their own column.
• Updated the Grouped by Subject tab of the tm_missing_data module to present data the same way the Summary tab does.
• Added support for NA level in grouping variable in By variable levels table in tm_missing_data module.
• Added informative labels for each level of grouping variable in By variable levels table in tm_missing_data module.
• Added a checkbox to tm_g_scatterplot to toggle the option to free up the x and y axis scales whenever faceting arguments are provided.
• Used browser-side processing in tm_data_table so that Buttons extension could download full table. Added example for advanced usage of DT in the module.

Bug fixes

• Fixed an error in tm_variable_browser when the selected column is logical(1).
• Fixed bugs in the modules' vignette examples.

Miscellaneous

• Added R version requirement R >= 3.6.
• Removed input_id argument from teal.devel::data_merge_module calls in all modules.
• Refactored the defunct teal.devel::data_extract_input into its replacement teal.devel::data_extract_ui.
• Updated teal.devel::data_merge_srv to use dplyr::inner_join instead of dplyr::left_join in tm_outliers module.
• Removed the overlay statistics table in tm_g_distribution module.
• Removed dependency on test.nest package.
• Removed dependency on utils.nest package and replaced its functions with equivalents from the checkmate package.

v0.2.11

New features

• A new module, tm_file_viewer, was added for the visualization of static files.
• A new module, tm_g_distribution, was added for distribution analysis.

Bug fixes

• Fixed the bar plot order for factor variables in tm_variable_browser.

Enhancements

• Updated examples and tests using scda synthetic data to replace random.cdisc.data.

tm_variable_browser

• Added sparkline support for Date/POSIXct/POSIXlt variable types.
• Fixed histograms to contain at least two bars.

tm_outliers

• Added filter_spec support.
• Simplified returned R code.
• Support select_spec for categorical variables.

tm_g_scatterplotmatrix

• Added ordered select input support.
• Decoupled the dataset list from the variables list parameters.

tm_g_association

• Added ordered select input support.

tm_t_crosstable

• Added ordered select input support.

tm_g_scatterplot

• Modified the trend line feature of the scatterplot to display the raw equation that will equal the actual y value when the actual x values are plugged in.

Miscellaneous

• Updated LICENCE and README with new package references.
• Added error_on_lint: TRUE to .lintr.
• Updated quantile type = 2 argument in tm_variable_browser to be in line with STREAM.

v0.2.10

• Refactored the internal code of all the modules to optimize their performance.
• Refactored tm_g_scatterplot to compute trend line statistics using ggpmisc::stat_poly_eq to simplify code and to have labels for each group on the plot.
• Refactored tm_g_scatterplot to enable filtering via the Encoding Panel using the new filter_spec functionality.
• Added support for logical variables in tm_variable_browser.
• Updated tm_outliers to handle non-CDISC datasets.
• Updated UI of tm_variable_browser for factor and character variables with more than 30 levels.
• Updated sparklines to remove NA values for numeric variables.
• Added checkbox to display number of observations on plot to tm_g_scatterplot.
• Added validation statements to tm_g_scatterplot handling users choosing more than one facet variable.
• Improved performance of tm_variable_browser by a more efficient sparkline generation.
• Added the html code type for all datasets labels inside tm_missing_data.
• Improved the styling of tool tips in tm_a_regression, tm_missing_data and tm_variable_browser.

v0.2.9

• Added download, enlarge and resize graph options to tm_variable_browser module.
• Added download and expand options to the table in tm_t_crosstable.
• Enabled selection of custom datasets for tm_variable_browser with datasets_selected argument.
• Allowed all dataset variables to be used as grouping variables in by variable levels tab of tm_missing_data, not just those selected to be displayed as rows in the table.
• Enabled the brushing of points in NA categories when facetting in tm_g_scatterplot.
• Added persistence for the number of entries displayed in data tables.
• Removed 'treat variable as factor' checkbox in tm_variable_browser if no graph shown.
• Fixed DT length reset in tm_variable_browser on "Show parent dataset variables" checkbox tick.

v0.2.8

• Added new module tm_outliers to analyse outliers in datasets.
• Added max_deg optional argument to scatterplot to allow users to choose the maximum smoothing degree for the trend line.
• Added column and row facetting functionality to the scatterplot.
• Added possibility to specify type of join in tm_t_crosstable. Incorporate missings resulting from non inner join.
• Fixed edge case errors in tm_missing_data caused by input dataset not having categorical variables or being a data.frame instead of tibble.
• Fixed tm_a_pca biplot plot when coloring with a factor/character/numeric with < 6 values variable.
• Fixed typo in outlier definition in tm_variable_browser.
• Sparklines no longer shown for numeric variables with more than 100000 rows.
• Colors legend for each plot.
• Replaced "Show variables other than in ADSL" checkbox to more general "Show parent dataset variables".
• Capitalize default module labels.
• Some of the outputs of tm_missing_data are conditional to the data being a CDISC data.
• Added pre_output and post_output arguments to tm_data_table, tm_missing_data, tm_variable_browser.
• Fixed issue in tm_data_table when selecting "show distinct rows" if variable names had non-alphanumeric characters.

v0.2.7

• Introduced sparklines for quick, inline variable summaries.
• Added option to remove outliers.
• Histograms and statistics tables are now displayed for variables of type Date, POSIXct and POSIXlt.
• Character variable summary statistics tables are now displayed in decreasing order of occurrences instead of alphabetical.
• Display number of non-missing rows n in statistics table for numeric variables.
• Added ability to treat numeric variables as categorical.
• tm_variable_browser shows from 30 up to 50 levels divided in 2 columns for character/factor variables with more than 30 unique levels.
• Added support for outlier labels to tm_a_regression and provided an additional optional argument, default_outlier_label which can be used to specify the default column used to label outliers.
• Implemented trend line.
• Added marginal density plots.
• Added option to display rug plot to both axes.
• Added shape and point color arguments. The latter users colourpicker::colourInput.
• Added size_by variable to scatterplot and allowed for point size to be mapped to a numeric variable.
• Added bar chart to missing data combination plot.
• Removed keys from missing data combinations plot in when they have not been selected.
• Bivariate plots with two continuous variables now allow adding lines.
• Show labels on x axis when selecting a categorical variable and fixed issues when deselecting variables and datasets in the encodings panel (including the addition of meaningful warnings).
• Updated to include Plot settings and Plot specific settings.
• Integrated is_single_dataset argument for data_extract_input function calls to simplify encodings panel UI.
• Moved code argument to cdisc_dataset (from cdisc_data) in examples and vignettes.
• Require ggmosaic version >= 0.3.0.