3.3.0

Release Note 3.3.0

features

• ONE 3
• Handle extraction of sessions where first Bpod trial missed on FPGA
• Support for multi depth sessions by passing slices kwarg to suite2p fork
• Selectively remove old FOV datasets in MesoscopePreprocess
• Added starplot function
• Improvements to LightningPose and SpikeSorting tasks

Bugfixes

• Add back PROJECT_EXTRACTION_VERSION and TASK_VERSION to session JSON
• Fix error in MesoscopeCompress when compressing multiply imaging bouts
• Fix error in MesoscopeSync.setUp with remote location

2.40.1

2.40.1

• Bugfix: ibllib.io.sess_params.merge_params supports tasks extractors key
• Bugfix: ignore stale experiment description lock files when loading session params

2.40.0

What's Changed

• Minor fixes by @k1o0 in #864
• Duplicate experiment description tasks by @k1o0 in #867
• Resolves #865 by @k1o0 in #868
• np.NaN -> np.nan for numpy 2.0 support by @k1o0 in #870
• Neuromodulator by @oliche in #869
• Iblsort by @oliche in #811

Full Changelog: 2.39.1...2.40.0

2.39.0

What's Changed

• Docs by @mayofaulkner in #809
• update wf extractions args in SpikeSorting task by @chris-langfield in #807
• SpikeSortingLoader.raw_waveforms() by @chris-langfield in #823
• Force dynamic by @k1o0 in #813
• Remove old pipeline by @k1o0 in #840
• Aggregate trials by @k1o0 in #843
• Aggregate training by @k1o0 in #844
• Docs by @mayofaulkner in #847
• Camera fixes by @mayofaulkner in #849
• Mesoscope preprocess class by @k1o0 in #851
• Mesoscope preprocess class by @k1o0 in #855
• AlyxClient instead of ONE in report_health by @k1o0 in #856
• Qc fixes by @oliche in #852
• iterate only plane folders in suite2p dir by @k1o0 in #860
• Register inputs without rename in RegisterSnapshots by @k1o0 in #861
• neuromodulatorCW it a subclass of advancedCW by @oliche in #859

Full Changelog: 2.38.0...2.39.0

2.38.0

Release Note 2.38.0

features

• Support running large pipeline jobs within multiple python environments
• Extraction and QC of of task pause periods
• Register animated GIF snapshots and tiff images
• Load waveforms low level changes in spike sorting loader
• Loading of additional channel object attributes (qc labels) in spike sorting loader
• Stimulus times now extracted in a more robust manner

bugfixes

• Fix in training plots when no trials in block

2.37.0

What's Changed

• Passive extractions by @mayofaulkner in #785
• Support the upload of animated GIF files without resizing by @k1o0 in #780
• Legacy retirement by @k1o0 in #783
• Ephys trials v8 by @mayofaulkner in #789
• fix to check for incorrect namespace when sync is nidq by @mayofaulkner in #790

Full Changelog: 2.36.0...2.37.0

2.36.0

What's Changed

• Docs by @mayofaulkner in #781
• Spike sorting rerun by @chris-langfield in #755

Full Changelog: 2.35.3...2.36.0

2.35.3

• Use correct task for timeline acquisitions in make_pipeline

2.35.2

2.35.2

• Flag to allow session registration without water administrations
• Support extraction of repNum for advancedChoiceWorld
• Support matplotlib v3.9; min slidingRP version now 1.1.1

2.35.1

2.35.1

• Ensure no REST cache used when searching sessions in IBLRegistationClient