Skip to content

Commit

Permalink
Deploy to GitHub pages
Browse files Browse the repository at this point in the history
  • Loading branch information
github-actions[bot] authored Apr 11, 2024
0 parents commit 283b9e5
Show file tree
Hide file tree
Showing 93 changed files with 223,147 additions and 0 deletions.
47 changes: 47 additions & 0 deletions mo/.htaccess
Original file line number Diff line number Diff line change
@@ -0,0 +1,47 @@
# Turn off MultiViews
Options -MultiViews

# Directive to ensure *.rdf files served as appropriate content type,
# if not present in main apache config
AddType application/rdf+xml .rdf
AddType application/rdf+xml .owl
AddType text/turtle .ttl
AddType application/n-triples .n3
AddType application/ld+json .jsonld
# Rewrite engine setup
RewriteEngine On
#Change the path to the folder here
RewriteBase /mo

# Rewrite rule to serve HTML content from the vocabulary URI if requested
RewriteCond %{HTTP_ACCEPT} !application/rdf\+xml.*(text/html|application/xhtml\+xml)
RewriteCond %{HTTP_ACCEPT} text/html [OR]
RewriteCond %{HTTP_ACCEPT} application/xhtml\+xml [OR]
RewriteCond %{HTTP_USER_AGENT} ^Mozilla/.*
RewriteRule ^$ index-de.html [R=303,L]

# Rewrite rule to serve JSON-LD content from the vocabulary URI if requested
RewriteCond %{HTTP_ACCEPT} application/ld\+json
RewriteRule ^$ ontology.jsonld [R=303,L]

# Rewrite rule to serve RDF/XML content from the vocabulary URI if requested
RewriteCond %{HTTP_ACCEPT} \*/\* [OR]
RewriteCond %{HTTP_ACCEPT} application/rdf\+xml
RewriteRule ^$ ontology.rdf [R=303,L]

# Rewrite rule to serve N-Triples content from the vocabulary URI if requested
RewriteCond %{HTTP_ACCEPT} application/n-triples
RewriteRule ^$ ontology.nt [R=303,L]

# Rewrite rule to serve TTL content from the vocabulary URI if requested
RewriteCond %{HTTP_ACCEPT} text/turtle [OR]
RewriteCond %{HTTP_ACCEPT} text/\* [OR]
RewriteCond %{HTTP_ACCEPT} \*/turtle
RewriteRule ^$ ontology.ttl [R=303,L]

RewriteCond %{HTTP_ACCEPT} .+
RewriteRule ^$ 406.html [R=406,L]
# Default response
# ---------------------------
# Rewrite rule to serve the RDF/XML content from the vocabulary URI by default
RewriteRule ^$ ontology.rdf [R=303,L]
10 changes: 10 additions & 0 deletions mo/406.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN">
<html><head>
<title>406 Not Acceptable</title>
</head>
<body>
<h1>Not Acceptable</h1>
<p>An appropriate representation of the requested resource could not be found on this server.</p>
Available variants:<ul><li><a href="index-de.html">html</a></li><li><a href="ontology.jsonld">JSON-LD</a></li><li><a href="ontology.rdf">RDF/XML</a></li><li><a href="ontology.nt">N-Triples</a></li><li><a href="ontology.ttl">TTL</a></li></ul>

</body></html>
5,000 changes: 5,000 additions & 0 deletions mo/index-de.html

Large diffs are not rendered by default.

5,000 changes: 5,000 additions & 0 deletions mo/index-en.html

Large diffs are not rendered by default.

5,000 changes: 5,000 additions & 0 deletions mo/index.html

Large diffs are not rendered by default.

4,053 changes: 4,053 additions & 0 deletions mo/ontology.jsonld

Large diffs are not rendered by default.

1,506 changes: 1,506 additions & 0 deletions mo/ontology.nt

Large diffs are not rendered by default.

2,294 changes: 2,294 additions & 0 deletions mo/ontology.rdf

Large diffs are not rendered by default.

1,682 changes: 1,682 additions & 0 deletions mo/ontology.ttl

Large diffs are not rendered by default.

17 changes: 17 additions & 0 deletions mo/provenance/provenance-de.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
<!DOCTYPE html>
<html>
<head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8" />

</head>

<body>
<div class="head">
<h1>Herkunft von Microscopy Ontology (MO) Dokumentation (https://w3id.org/pmd/mo/1.0.0)</h1>
<ul>
<li>Entwickler der Ontologie: https://orcid.org/0000-0002-3717-7104, https://orcid.org/0000-0002-7094-5371</li><li>Die Ontologie-Dokumentation ist Ergebnis der Anwendung vom <a href="https://github.com/dgarijo/Widoco">Widoco Tool</a> (das wiederum <a href="http://www.essepuntato.it/lode/">LODE</a> zur Generierung der Querverweise verwendet.</li>
</ul>
</div>
<p>zur&uuml;ck zu <a href="..\index-de.html">Dokumentation</a>. <a href="provenance-de.ttl">TTL Format</a></p></div>
</body>
</html>
12 changes: 12 additions & 0 deletions mo/provenance/provenance-de.ttl
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix : <> .
<https://w3id.org/pmd/mo/1.0.0> a prov:Entity;
dc:title "Microscopy Ontology (MO)";
prov:wasAttributedTo <https://orcid.org/0000-0002-3717-7104>;
dc:creator <https://orcid.org/0000-0002-3717-7104>;
prov:wasAttributedTo <https://orcid.org/0000-0002-7094-5371>;
dc:creator <https://orcid.org/0000-0002-7094-5371>;
prov:wasAttributedTo <https://github.com/dgarijo/Widoco/>,<http://www.essepuntato.it/lode/>;
.
17 changes: 17 additions & 0 deletions mo/provenance/provenance-en.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
<!DOCTYPE html>
<html>
<head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8" />

</head>

<body>
<div class="head">
<h1>Provenance for Microscopy Ontology (MO) Documentation (https://w3id.org/pmd/mo/1.0.0)</h1>
<ul>
<li>Ontology created by: https://orcid.org/0000-0002-3717-7104, https://orcid.org/0000-0002-7094-5371</li><li>The ontology documentation was the result of using the <a href="https://github.com/dgarijo/Widoco">Widoco tool</a> (which itself uses <a href="http://www.essepuntato.it/lode/">LODE</a> for generating the crossreference section).</li>
</ul>
</div>
<p>back to <a href="..\index-en.html">documentation</a>. <a href="provenance-en.ttl">TTL format</a></p></div>
</body>
</html>
12 changes: 12 additions & 0 deletions mo/provenance/provenance-en.ttl
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix : <> .
<https://w3id.org/pmd/mo/1.0.0> a prov:Entity;
dc:title "Microscopy Ontology (MO)";
prov:wasAttributedTo <https://orcid.org/0000-0002-3717-7104>;
dc:creator <https://orcid.org/0000-0002-3717-7104>;
prov:wasAttributedTo <https://orcid.org/0000-0002-7094-5371>;
dc:creator <https://orcid.org/0000-0002-7094-5371>;
prov:wasAttributedTo <https://github.com/dgarijo/Widoco/>,<http://www.essepuntato.it/lode/>;
.
34 changes: 34 additions & 0 deletions mo/readme.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,34 @@
About Widoco output
===================
The purpose of Widoco is to reuse and integrate existing tools for documentation, plus the set of features listed below:
* Separation of the sections of your html page so you can write them independently and replace only those needed.
* Automatic annotation in RDF-a of the html produced.
* Association of a provenance page which includes the history of your vocabulary (W3C PROV-O compliant).
* Metadata extraction from the ontology plus the means to complete it on the fly when generating your ontology.
* Guidelines on the main sections that your document should have and how to complete them.

Widoco will create 3 different folders:
|
|-provenance (a folder including an html and RDF serialization of how the documentation page was created)
|-resources (folder with the different resources)
|-sections (folder with the different sections of the documentation, separated for easy editing. Just edit one and the main page will be updated)

Completing ontology metadata.
===================
Widoco uses the ontology metadata to update a configuration file. If you complete that configuration file (ended up widoco.conf), the tool will enhance your html with additional details, such as how to cite the document, previous revisions, icons with the licence, etc.

Browser issues
==========
The result of executing Widoco is an html file. We have tested it in Mozilla, IE and Chrome, and when the page is stored in a server all the browsers work correctly. If you view the file locally, we recommend you to use Mozilla Firefox (or Internet Explorer, if you must). Google Chrome will not show the contents correctly, as it doesn't allow XMLHttpRequest without HTTP. If you want to view the page locally with Google Chrome you have two possibilities:

a) Place the file in a server and access it via its URL (for example, put it in dropbox and access through its public url).

b) Execute Chrome with the following commands :

(WIN) chrome.exe --allow-file-access-from-files,

(OSX) open /Applications/Google\ Chrome.app/ --args --allow-file-access-from-files

(UNX) /usr/bin/google-chrome --allow-file-access-from-files

Do you have a problem? open an issue at https://github.com/dgarijo/Widoco
124 changes: 124 additions & 0 deletions mo/resources/extra.css
Original file line number Diff line number Diff line change
@@ -0,0 +1,124 @@
body {
text-align: justify;
}

h1 {
line-height: 110%;
}

.hlist {
border: 1px solid navy;
padding:5px;
background-color: #F4FFFF;
}

.hlist li {
display: inline;
display: inline-table;
list-style-type: none;
padding-right: 20px;

}

.entity {
border: 1px solid navy;
margin:5px 0px 5px 0px;
padding: 5px;
}

.type-c {
cursor:help;
color:orange;
}

.type-op {
cursor:help;
color:navy;
}

.type-dp {
cursor:help;
color:green;
}

.type-ap {
cursor:help;
color:maroon;
}

.type-ni {
cursor:help;
color:brown;
}

.logic {
color:purple;
font-weight:bold;
}

h3 {
margin-top: 3px;
padding-bottom: 5px;
border-bottom: 1px solid navy;
}

h2 {
margin-top:40px;
}

.dotted {
border-bottom: 1px dotted gray;
}

dt {
margin-top:5px;
}

.description {
border-top: 1px dashed gray;
border-bottom: 1px dashed gray;
background-color: rgb(242, 243, 244);
margin-top:5px;
padding-bottom:5px;
}

.description dl {
background-color: rgb(242, 243, 244);
}

.description ul {
padding-left: 12px;
margin-top: 0px;
}

.backlink {
font-size:10pt;
text-align:right;
float:right;
color:black;
padding: 2px;
border: 1px dotted navy;
background-color: #F4FFFF;
}

.imageblock {
text-align: center;
}

.imageblock img {
border:1px solid gray;
}

.endnote {
margin-top: 40px;
border-top: 1px solid gray;
padding-top: 10px;
text-align: center;
color:gray;
font-size:70%;
}

.literal {
color:green;
font-style:italic;
}
18 changes: 18 additions & 0 deletions mo/resources/jquery.js

Large diffs are not rendered by default.

6 changes: 6 additions & 0 deletions mo/resources/marked.min.js

Large diffs are not rendered by default.

Loading

0 comments on commit 283b9e5

Please sign in to comment.