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111 Open 374 Closed
111 Open 374 Closed
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Issues list

Make Python notebook demonstrating the ID minting process documentation Improvements or additions to documentation
#892 opened Feb 8, 2025 by eecavanna
@eecavanna
Develop API endpoint for ontology checking -runtime
#891 opened Feb 5, 2025 by mslarae13
Implement Python notebook for migrating from schema version 11.3.0 to 11.4.0
#890 opened Feb 3, 2025 by eecavanna
@eecavanna
Generic process to fetch identifiers from NCBI and populate our mongo records when NMDC is the submission broker enhancement New feature or request
#889 opened Jan 30, 2025 by aclum
@sujaypatil96
GOLD ETL missing insdc_biosample_identifiers values in biosample_set records bug Something isn't working
#886 opened Jan 30, 2025 by aclum
@sujaypatil96
Dagster is using Postgres 11, which is EOL
#885 opened Jan 29, 2025 by eecavanna
Configure test runners to also run doctests enhancement New feature or request X SMALL Less than 1 day
#883 opened Jan 26, 2025 by eecavanna
2 tasks
@eecavanna
1
Update docker compose configs to use mongo:7.0.15 image rather than mongo:6.0.4 dependencies Pull requests that update a dependency file upstream-issue The root cause lies upstream from here X SMALL Less than 1 day
#880 opened Jan 23, 2025 by dwinston
2 tasks
@dwinston
4.7 API MVP recurring Q2 milestone
#879 opened Jan 23, 2025 by aclum
2 tasks
@shreddd @dwinston
Implement MongoDB transaction for API endpoint X SMALL Less than 1 day
#877 opened Jan 22, 2025 by eecavanna
1
@eecavanna
Updates to GOLD translator so it can handle multiple sequencing runs enhancement New feature or request
#876 opened Jan 22, 2025 by sujaypatil96
@sujaypatil96
1
API endpoint /metadata/json:submit returns 500 Internal Server Error when accessed via workflow automation client bug Something isn't working
#875 opened Jan 21, 2025 by mbthornton-lbl
2
GHA workflow mkdocs fails to access mkdocs-material-insiders repository
#870 opened Jan 20, 2025 by eecavanna
1
Update GOLD ETL logic for populating PI information enhancement New feature or request
#855 opened Dec 20, 2024 by aclum
@sujaypatil96
Document task-specific example changesheet row/rows enhancement New feature or request
#832 opened Dec 11, 2024 by eecavanna
@eecavanna
Add support for shorter lifetimes on tokens enhancement New feature or request
#828 opened Dec 10, 2024 by shreddd
1
2
Diagrams on "User Journeys" page are illegible (dark foreground on dark background) bug Something isn't working documentation Improvements or additions to documentation
#822 opened Dec 8, 2024 by eecavanna
2
Refactor Code from using PyMongo to Motor (Supporting Async) enhancement New feature or request
#811 opened Dec 5, 2024 by mkshah605
@mkshah605
Permissions for /queries:run API endpoint are too coarse / not granular enough X SMALL Less than 1 day
#799 opened Nov 27, 2024 by eecavanna
3
Explore migrating from pymongo to motor as an async python libary for mongodb enhancement New feature or request
#787 opened Nov 21, 2024 by mkshah605
@mkshah605
5
Deleting value from list with changesheets deletes all values bug Something isn't working
#785 opened Nov 20, 2024 by aclum
get off python-jose (switch to PyJWT) for more-likely upstream security patching enhancement New feature or request
#781 opened Nov 19, 2024 by dwinston
1
navigating documentation was a bit difficult
#777 opened Nov 14, 2024 by mslarae13
2
migrate runtime status page to microbiomedata.org subdomain? decision needed tag issues that need to be unblocked by decisions enhancement New feature or request
#772 opened Nov 14, 2024 by dwinston
2
Cannot determine origin of Mongo index backlog Not assigned to a sprint or not completed during a planned sprint. Needs to be reprioritized. cleanup 🧹 Related to cleaning up code, documentation, etc. decision needed tag issues that need to be unblocked by decisions documentation Improvements or additions to documentation question Further information is requested
#769 opened Nov 13, 2024 by eecavanna
2 tasks
6
ProTip! Updated in the last three days: updated:>2025-02-05.