Add Standalone_GCBM

Signed-off-by: Kateryna Derhaus <[email protected]>

Standalone_GCBM/documentation/GCBM_Config_Examples/Modules - CBMAggregatorLibPQXXWriter.txt

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+{
+	"Modules": {
+        "CBMAggregatorLibPQXXWriter": {
+            "library": "moja.modules.cbm",
+            "order": 13,
+            "enabled": true,
+            "settings": {
+                "connection_string": "host=localhost port=5432 dbname=postgres user=postgres password=$1welcome",
+                "schema": "libpqxx_testing"
+            }
+        }
+	}
+}

Standalone_GCBM/documentation/GCBM_Config_Examples/Modules - WriteVariableGeotiff.txt

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+{   
+    "Libraries": {
+        "moja.modules.gdal": "external"
+    }
+}
+
+{
+	"Modules": {
+        "WriteVariableGeotiff": {
+            "enabled": true,
+            "order": 11,
+            "library": "moja.modules.gdal",
+            "settings": {
+                "items": [
+                    {
+                        "data_name": "Age",
+                        "enabled": true,
+                        "variable_data_type": "Int16",
+                        "on_notification": "OutputStep",
+                        "variable_name": "age"
+                    }
+                ],
+                "output_path": "output"
+            }
+        }
+    }
+}

Standalone_GCBM/documentation/GCBM_Config_Examples/Scheduling - By block.txt

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+        "landscape": {
+            "num_threads": 4,
+            "iteration_type": "BlockIndex",
+            "blocks": [
+                {
+                    "tile_index": 12674,
+                    "block_index": 51
+                }
+            ],
+            "y_pixels": 4000,
+            "provider": "RasterTiled",
+            "x_pixels": 4000,
+            "tile_size_x": 1.0,
+            "tile_size_y": 1.0
+        }

Standalone_GCBM/documentation/GCBM_Config_Examples/Scheduling - By cell.txt

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+        "landscape": {
+            "num_threads": 4,
+            "iteration_type": "CellIndex",
+            "cells": [
+                {
+                    "tile_index": 12674,
+                    "block_index": 51,
+                    "cell_index": 1
+                }
+            ],
+            "y_pixels": 4000,
+            "provider": "RasterTiled",
+            "x_pixels": 4000,
+            "tile_size_x": 1.0,
+            "tile_size_y": 1.0
+        }

Standalone_GCBM/documentation/GCBM_Config_Examples/Scheduling - By tile lat lon.txt

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+        "landscape": {
+            "num_threads": 4,
+            "tiles": [
+                {
+                    "x": -106,
+                    "y": 55
+                }
+            ],
+            "y_pixels": 4000,
+            "provider": "RasterTiled",
+            "x_pixels": 4000,
+            "tile_size_x": 1.0,
+            "tile_size_y": 1.0
+        }

Standalone_GCBM/documentation/GCBM_Config_Examples/Tiler - Last pass disturbance timeseries.txt

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+Last pass disturbance timeseries is autoconfigured in GCBM with Feb. 2019 and later
+versions of update_gcbm_config.py. For this to work, tile last pass disturbance layers
+the same way as disturbance layers, but include the tag "last_pass_disturbance".
+
+For example:
+
+        # Last pass disturbance timeseries for spinup
+        for i in range(1, 4, 1):
+            layers.append(DisturbanceLayer(
+                rule_manager,
+                VectorLayer("spinup_disturbances_{}".format(i),
+                            os.path.join(layer_root, "spinup_disturbances", "spinup_disturbances.shp"),
+                            [
+                                Attribute("lastpass_{}".format(i))
+                            ]),
+                year=Attribute("lastpass_{}".format(i)),
+                disturbance_type="Wild Fire",
+                tags=["last_pass_disturbance"]))
+
+GCBM configuration looks like:
+
+    "SpinupVariables": {
+        "last_pass_disturbance_timeseries": {
+            "transform": {
+                "allow_nulls": "true",
+                "type": "CompositeTransform",
+                "library": "internal.flint",
+                "vars": [
+                    "spinup_disturbances_2",
+                    "spinup_disturbances_1",
+                    "spinup_disturbances_3"
+                ],
+                "format": "long"
+            }
+        }
+    },

Standalone_GCBM/documentation/GCBM_Config_Examples/Variables - Timeseries.txt

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+{
+    "Variables": {
+        "mean_annual_temperature": {
+            "transform": {
+                "library": "internal.flint",
+                "type": "TimeSeriesIdxFromFlintDataTransform",
+                "provider": "RasterTiled",
+                "data_id": "mean_annual_temperature",
+                "sub_same": "true",
+                "start_year": 0,
+                "data_per_year": 1,
+                "n_years": 10
+            }
+        }
+    }
+}
+
+{
+    "Variables": {
+        "mean_annual_temperature": {
+            "transform": {
+                "library": "internal.flint",
+                "type": "TimeSeriesIdxFromFlintDataTransform",
+                "provider": "RasterTiled",
+                "data_id": "tmean",
+                "sub_same": "true",
+                "origin": "calendar",
+                "start_year": 1990,
+                "data_per_year": 1,
+                "n_years": 26
+            }
+        }
+    }
+}

Standalone_GCBM/documentation/disturbance_type_queries.txt

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+-- Queries for the GCBM SQLite input database
+
+-- List available disturbance types for the spatial unit.
+SELECT DISTINCT dt.name AS disturbance_type
+FROM disturbance_type dt
+INNER JOIN disturbance_matrix_association dma
+    ON dt.id = dma.disturbance_type_id
+INNER JOIN spatial_unit spu
+    ON dma.spatial_unit_id = spu.id
+INNER JOIN admin_boundary a
+    ON spu.admin_boundary_id = a.id
+INNER JOIN eco_boundary e
+    ON spu.eco_boundary_id = e.id
+WHERE LOWER(a.name) LIKE LOWER('British Columbia') -- The default admin boundary for the sample project.
+    AND LOWER(e.name) LIKE LOWER('Taiga Plains')   -- The default eco boundary for the sample project.
+ORDER BY dt.id;
+
+-- List available disturbance matrices for the spatial unit.
+SELECT
+    dt.name,
+    src.name AS from_pool,
+    dst.name AS to_pool,
+    dmv.proportion
+FROM disturbance_type dt
+INNER JOIN disturbance_matrix_association dma
+    ON dt.id = dma.disturbance_type_id
+INNER JOIN disturbance_matrix dm
+    ON dm.id = dma.disturbance_matrix_id
+INNER JOIN disturbance_matrix_value dmv
+    ON dm.id = dmv.disturbance_matrix_id
+INNER JOIN pool src
+    ON dmv.source_pool_id = src.id
+INNER JOIN pool dst
+    ON dmv.sink_pool_id = dst.id
+INNER JOIN spatial_unit spu
+    ON dma.spatial_unit_id = spu.id
+INNER JOIN admin_boundary a
+    ON spu.admin_boundary_id = a.id
+INNER JOIN eco_boundary e
+    ON spu.eco_boundary_id = e.id
+WHERE LOWER(a.name) LIKE LOWER('British Columbia') -- The default admin boundary for the sample project.
+    AND LOWER(e.name) LIKE LOWER('Taiga Plains')   -- The default eco boundary for the sample project.
+ORDER BY dt.id;

Standalone_GCBM/documentation/disturbance_types.csv

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+10% commercial thinning
+15% commercial thinning
+20% commercial thinning
+25% commercial thinning
+30% commercial thinning
+35% commercial thinning
+40% commercial thinning
+45% commercial thinning
+50% commercial thinning
+55% commercial thinning
+60% commercial thinning
+65% commercial thinning
+70% commercial thinning
+75% commercial thinning
+85% precommercial thinning
+97% clear-cut
+Afforestation
+Aspen Defoliators — Type A
+Aspen Defoliators — Type B
+Aspen Defoliators — Type C
+Aspen Defoliators — Type D
+Aspen Defoliators — Type E
+Aspen Defoliators — Type F
+Clear-cut with slash-burn
+Clearcut harvesting with salvage
+Clearcut harvesting without salvage
+Deforestation
+Deforestation — Agriculture — Salvage, uprooting and burn
+Deforestation — Agriculture — Salvage, uprooting and decay
+Deforestation — Forestry — Salvage, uprooting and burn
+Deforestation — Forestry — Salvage, uprooting and decay
+Deforestation — Hydro reservoir — Burn
+Deforestation — Hydro reservoir — No salvage or burn
+Deforestation — Hydro reservoir — Salvage and decay
+Deforestation — Hydro reservoir — salvage and burn
+Deforestation — Hydro — Right-of-way — Salvage and burn
+Deforestation — Hydro — Right-of-way — Salvage and decay
+Deforestation — Industry — Salvage, uprooting and burn
+Deforestation — Industry — Salvage, uprooting and decay
+Deforestation — Mining — Salvage, uprooting and burn
+Deforestation — Mining — Salvage, uprooting and decay
+Deforestation — Municipal — Salvage, uprooting and burn
+Deforestation — Municipal — Salvage, uprooting and decay
+Deforestation — Oil and gas — Salvage and burn
+Deforestation — Oil and gas — Salvage and decay
+Deforestation — Oil and gas — Salvage, uprooting and burn
+Deforestation — Oil and gas — Salvage, uprooting and decay
+Deforestation — Peat mining — Uprooting and burn
+Deforestation — Peat mining — Uprooting and decay
+Deforestation — Recreation — Salvage and burn
+Deforestation — Recreation — Salvage and decay
+Deforestation — Recreation — Salvage, uprooting and burn
+Deforestation — Recreation — Salvage, uprooting and decay
+Deforestation — Transportation — Salvage, uprooting and burn
+Deforestation — Transportation — Salvage, uprooting and decay
+Eastern hemlock looper — Light defoliation
+Eastern hemlock looper — Moderate defoliation
+Eastern hemlock looper — Severe cumulative defoliation
+Eastern hemlock looper — Severe defoliation
+Fire with salvage logging
+Firewood Collection - HW
+Firewood Collection - SW
+Firewood Collection - post logging
+Firewood Collection - post natural disturbance 
+Generic 10% mortality
+Generic 15% mortality
+Generic 20% mortality
+Generic 25% mortality
+Generic 30% mortality
+Generic 35% mortality
+Generic 40% mortality
+Generic 45% mortality
+Generic 5% mortality
+Generic 50% mortality
+Generic 55% mortality
+Generic 60% mortality
+Generic 65% mortality
+Generic 70% mortality
+Generic 75% mortality
+Generic 80% mortality
+Generic 85% mortality
+Generic 90% mortality
+Generic 95% mortality
+Insect disturbance
+Insect disturbance with salvage logging
+Mountain pine beetle — Low impact
+Mountain pine beetle — Moderate impact
+Mountain pine beetle — Severe impact
+Mountain pine beetle — Very severe impact
+Natural nonforest rehabilitation
+Natural succession
+Old default fire
+Partial cutting
+Planting
+Roads and landings
+Salvage logging after fire
+Salvage logging after insects
+Spruce beetle — 10% mortality
+Spruce beetle — 2% mortality
+Spruce beetle — 20% mortality
+Stand–replacing natural succession
+Unknown
+WJPBW — Year 1 of outbreak
+WJPBW — Year 2 of outbreak
+WJPBW — Year 3 of outbreak
+WJPBW — Year 4 of outbreak
+Wildfire