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115 Open 1,107 Closed
115 Open 1,107 Closed
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Issues list

Using resume-from stdout is overloaded with a dot progress
#1251 opened Feb 13, 2025 by DHmeduni
dorado demux can't read custom barcodes fasta file, failed to extract sequences barcode Issues related to barcoding documentation Improvements or additions to documentation
#1250 opened Feb 12, 2025 by PhilliVanilli
1
Demultiplex both forward and reverse strands with rear end only barcodes barcode Issues related to barcoding
#1249 opened Feb 11, 2025 by eden528
1
Request: Reenabling the no-trim parameter enhancement New feature or request trim Issues related to adapter/primer trimming
#1248 opened Feb 10, 2025 by e-fuhrmann
Dorado basecalling error with RTX 5090 through WSL2
#1247 opened Feb 9, 2025 by ruicatxiao
PolyA tail in dorado Basecalled reads
#1246 opened Feb 8, 2025 by baibhav-bioinfo
1
aligning basecalled bam file to genome
#1244 opened Feb 5, 2025 by baibhav-bioinfo
8
discrepancy in number of reads in bam files
#1242 opened Feb 4, 2025 by baibhav-bioinfo
1
Dorado basecalling: handling fail, pass, and skip reads
#1241 opened Feb 4, 2025 by Patricie34
4
Distribution as Docker and/or conda package
#1240 opened Feb 3, 2025 by marchoeppner
Low Qscore after Dorado basecalling - P2 solo - ultra long reads
#1239 opened Jan 31, 2025 by jefferalexdurfue
1
Could dorado --estimate-poly-a provides the start and end of the estimated polyA(T) tail positions? enhancement New feature or request polyA Issue related to polyA tail estimation
#1235 opened Jan 28, 2025 by abcdtree
5
Does Dorado give high false positive rate for 6mA? mods For issues related to modified base calling
#1234 opened Jan 28, 2025 by Pombeboy
6
Plasmid poly(A) Disagreement Between 0.8.0 and 0.9.1 polyA Issue related to polyA tail estimation
#1233 opened Jan 28, 2025 by VBHerrenC
6
Dorado repeat expansion
#1231 opened Jan 27, 2025 by tanyasarkjain
2
Duplex + Polish
#1230 opened Jan 27, 2025 by strejcem
2
PCR primers and barcodes not apparent in large portion of reads
#1229 opened Jan 27, 2025 by smith12380
2
Dorado polish index error polish Issues related to polishing
#1227 opened Jan 23, 2025 by gwaldbieser
Barcode demultiplexing method not to separate multiple sequence runs question Issue is a question
#1226 opened Jan 22, 2025 by erepolliuchi
1
input reads for dorado polish Q polish Issues related to polishing question Issue is a question
#1225 opened Jan 21, 2025 by bruzecruise
2
default_thread_allocations should not use std::thread::hardware_concurrency() enhancement New feature or request
#1223 opened Jan 20, 2025 by jbd
1
dorado v0.9.0 does not remove adapter sequences from Ultra-long data bug Something isn't working trim Issues related to adapter/primer trimming
#1219 opened Jan 16, 2025 by is01
11
dorado correct empty output read_correction Read error correction
#1217 opened Jan 15, 2025 by malton-ont
3
Basecalling/demux+modbases: std::bad_alloc barcode Issues related to barcoding bug Something isn't working
#1213 opened Jan 9, 2025 by sklages
6
Feature request: Option for unsorted BAM output by dorado aligner
#1211 opened Jan 8, 2025 by cihanerkut
2
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