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NAVis

Tools for Neuron Analysis & Visualization
README.md

We make tools for processing and analysing of neurobiological data.

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  1. navis navis Public

    Python library for analysis of neuroanatomical data.

    Python 86 33

  2. pymaid pymaid Public

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    Python 23 11

  3. skeletor skeletor Public

    Extraction of 3D skeletons from meshes.

    Python 215 26

  4. fafbseg-py fafbseg-py Public

    Tools to work with the FlyWire connectome. Fully interoperable with navis.

    Python 13 5

  5. navis-flybrains navis-flybrains Public

    Transforms for navis that enable mapping between different Drosophila template brains.

    Jupyter Notebook 8 2

  6. fastcore fastcore Public

    [WIP] Fast core functions for navis re-implemented in Cython.

    Jupyter Notebook 1 2

Repositories

Showing 10 of 17 repositories
  • navis Public

    Python library for analysis of neuroanatomical data.

    navis-org/navis’s past year of commit activity
    Python 86 GPL-3.0 33 33 13 Updated Jan 5, 2025
  • navis-flybrains Public

    Transforms for navis that enable mapping between different Drosophila template brains.

    navis-org/navis-flybrains’s past year of commit activity
    Jupyter Notebook 8 GPL-3.0 2 6 1 Updated Dec 10, 2024
  • neuropython2024 Public

    Documentation and Material for the 2024 NeuroPython Workshop

    navis-org/neuropython2024’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Sep 24, 2024
  • octarine-navis-plugin Public

    Octarine plugin to visualize navis objects

    navis-org/octarine-navis-plugin’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 22, 2024
  • fastcore Public

    [WIP] Fast core functions for navis re-implemented in Cython.

    navis-org/fastcore’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 2 3 1 Updated Sep 16, 2024
  • pymaid Public

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    navis-org/pymaid’s past year of commit activity
    Python 23 GPL-3.0 11 36 3 Updated Aug 30, 2024
  • skeletor Public

    Extraction of 3D skeletons from meshes.

    navis-org/skeletor’s past year of commit activity
    Python 215 GPL-3.0 26 30 1 Updated Aug 28, 2024
  • fafbseg-py Public

    Tools to work with the FlyWire connectome. Fully interoperable with navis.

    navis-org/fafbseg-py’s past year of commit activity
    Python 13 GPL-3.0 5 4 2 Updated Aug 13, 2024
  • navis-mousebrains Public

    Template brains and transforms for mouse brains

    navis-org/navis-mousebrains’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 12, 2024
  • sparse-cubes Public

    Marching cubes for sparse matrices

    navis-org/sparse-cubes’s past year of commit activity
    Python 4 GPL-3.0 1 1 0 Updated May 23, 2023
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