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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 405

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 129

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 299 165

Repositories

Showing 10 of 94 repositories
  • docker-base Public

    Docker image build for nextstrain/base

    nextstrain/docker-base’s past year of commit activity
    Shell 12 6 12 5 Updated Feb 20, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 94 AGPL-3.0 50 69 11 Updated Feb 20, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 19 10 Updated Feb 20, 2025
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 23 9 15 9 Updated Feb 20, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 268 AGPL-3.0 129 220 (1 issue needs help) 39 Updated Feb 20, 2025
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 4 0 6 3 Updated Feb 19, 2025
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data’s past year of commit activity
    Python 32 27 8 14 Updated Feb 19, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 46 27 28 1 Updated Feb 19, 2025
  • dengue Public

    Nextstrain build for dengue virus

    nextstrain/dengue’s past year of commit activity
    Python 8 12 12 (1 issue needs help) 1 Updated Feb 18, 2025
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 299 AGPL-3.0 165 232 (4 issues need help) 33 Updated Feb 18, 2025
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