Update cl-edit.owl

Fixed incomplete obsoletion
obophenotype · Dec 16, 2024 · 8b40e9a · 8b40e9a
1 parent f1c599a
commit 8b40e9a
Showing 1 changed file with 9 additions and 5 deletions.
diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -3126,6 +3126,7 @@ Declaration(Class(obo:GO_0031045))
 Declaration(Class(obo:GO_0036053))
 Declaration(Class(obo:GO_0036376))
 Declaration(Class(obo:GO_0042599))
+Declaration(Class(obo:GO_0044237))
 Declaration(Class(obo:GO_0044316))
 Declaration(Class(obo:GO_0070278))
 Declaration(Class(obo:GO_0070483))
@@ -3342,7 +3343,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition")
 
 AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to")
 
-# Annotation Property: obo:IAO_0000700 (has ontology root term)
+# Annotation Property: obo:IAO_0000700 (preferred_root)
 
 AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root")
 
@@ -3436,11 +3437,11 @@ AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")
 
 AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")
 
-# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym)
+# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym)
 
 AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym")
 
-# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym)
+# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym)
 
 AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")
 
@@ -5118,8 +5119,8 @@ AnnotationAssertion(owl:deprecated obo:CL_0000161 "true"^^xsd:boolean)
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:31613538") Annotation(oboInOwl:hasDbXref "PMID:31670611") obo:IAO_0000115 obo:CL_0000162 "An epithelial cell of the stomach that is part of the fundic gastric gland. This cell is characterized by its pyramidal shape, abundant mitochondria, and a complex network of secretory canaliculi lined with microvilli. It secretes hydrochloric acid into the stomach lumen and produces intrinsic factor, essential for vitamin B12 absorption.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000162 "BTO:0001780")
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000162 "FMA:62901")
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wikipedia:Parietal_cell") oboInOwl:hasExactSynonym obo:CL_0000162 "oxyntic cell")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29263912") oboInOwl:hasExactSynonym obo:CL_0000162 "gastric parietal cell")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wikipedia:Parietal_cell") oboInOwl:hasExactSynonym obo:CL_0000162 "oxyntic cell")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29263912") Annotation(oboInOwl:hasDbXref "PMID:31613538") rdfs:comment obo:CL_0000162 "Parietal cells have dynamic, actin-supported microvilli that increase in number during active secretion, playing a crucial role in secreting hydrochloric acid and intrinsic factor. The structure and regulation of these microvilli are influenced by proteins such as ASAP3, which modulates Arf6 activity and actin assembly, thereby controlling microvilli formation and parietal cell function.")
 AnnotationAssertion(rdfs:label obo:CL_0000162 "parietal cell")
 SubClassOf(obo:CL_0000162 obo:CL_0000151)
@@ -8237,7 +8238,9 @@ SubClassOf(obo:CL_0000554 obo:CL_0000167)
 
 # Class: obo:CL_0000555 (obsolete neuronal brush cell)
 
+AnnotationAssertion(obo:IAO_0100001 obo:CL_0000555 obo:CL_4023161)
 AnnotationAssertion(rdfs:label obo:CL_0000555 "obsolete neuronal brush cell")
+AnnotationAssertion(owl:deprecated obo:CL_0000555 "true"^^xsd:boolean)
 
 # Class: obo:CL_0000556 (megakaryocyte)
 
@@ -28012,8 +28015,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "HPA:HPA") Annotation(oboInOwl
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001591 "CALOHA:TS-1277")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:hasRelatedSynonym obo:CL_1001591 "fallopian tube glandular cell")
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:hasRelatedSynonym obo:CL_1001591 "fallopian tube glandular cells")
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:hasRelatedSynonym obo:CL_1001591 "uterine tube glandular cell")
 AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_1001591 "oviduct glandular cell")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:hasRelatedSynonym obo:CL_1001591 "uterine tube glandular cell")
 AnnotationAssertion(rdfs:label obo:CL_1001591 "oviduct secretory cell")
 EquivalentClasses(obo:CL_1001591 ObjectIntersectionOf(obo:CL_1100001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000993)))
 SubClassOf(obo:CL_1001591 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004804))
@@ -30506,6 +30509,7 @@ SubClassOf(obo:CL_4023160 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061537))
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:9193142") Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Unipolar_brush_cell&oldid=1045937026") obo:IAO_0000115 obo:CL_4023161 "An excitatory glutamatergic interneuron found in the granular layer of the cerebellar cortex and also in the granule cell domain of the cochlear nucleus. Unipolar brush cells have a round or oval cell body with usually a single short dendrite that ends in a brush-like tuft of short dendrites unique to them known as dendrioles.")
 AnnotationAssertion(terms:contributor obo:CL_4023161 <http://orcid.org/0000-0001-7258-9596>)
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023161 "neuronal brush cell")
 AnnotationAssertion(rdfs:label obo:CL_4023161 "unipolar brush cell")
 SubClassOf(obo:CL_4023161 obo:CL_0000099)
 SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070025))