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NTR diffuse bipolar 4a cell and diffuse bipolar 4b cell #2892

Closed
Tracked by #2647
aleixpuigb opened this issue Jan 10, 2025 · 0 comments · Fixed by #2900
Closed
Tracked by #2647

NTR diffuse bipolar 4a cell and diffuse bipolar 4b cell #2892

aleixpuigb opened this issue Jan 10, 2025 · 0 comments · Fixed by #2900
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@aleixpuigb
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HCA/DCP Needed/useful for the Human Cell Atlas HuBMAP Needed/useful for HuBMAP new term request
Milestone
Milestone 20/01/2025

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aleixpuigb commented Jan 10, 2025 •
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Preferred term label
diffuse bipolar 4a cell

Synonyms (add reference(s), please)
DB4a (abbreviation, related) (doi:10.1101/2023.11.07.566105)

Definition (free text, with reference(s), please. PubMed ID format is PMID:XXXXXX)
An ON bipolar cell that has high expression of DIRC3, KCNJ3, LINC01915, PTPRK compared with other bipolar cells.
doi:10.1101/2023.11.07.566105
PMID:31995762

Parent cell type term (check the hierarchy here https://www.ebi.ac.uk/ols4/ontologies/cl)
ON-bipolar cell

Anatomical structure where the cell type is found (check Uberon for anatomical structures: https://www.ebi.ac.uk/ols4/ontologies/uberon)
retina

Your ORCID
https://orcid.org/0000-0001-6677-8489

Additional notes or concerns
present in human

Preferred term label
diffuse bipolar 4b cell

Synonyms (add reference(s), please)
DB4b (abbreviation, related) (doi:10.1101/2023.11.07.566105)

Definition (free text, with reference(s), please. PubMed ID format is PMID:XXXXXX)
An ON bipolar cell that has high expression of NOS1AP compared with other bipolar cells.
doi:10.1101/2023.11.07.566105
PMID:31995762

Parent cell type term (check the hierarchy here https://www.ebi.ac.uk/ols4/ontologies/cl)
ON-bipolar cell

Anatomical structure where the cell type is found (check Uberon for anatomical structures: https://www.ebi.ac.uk/ols4/ontologies/uberon)
retina

Your ORCID
https://orcid.org/0000-0001-6677-8489

Additional notes or concerns
present in human
@aleixpuigb aleixpuigb mentioned this issue Jan 10, 2025
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@aleixpuigb aleixpuigb self-assigned this Jan 13, 2025
@aleixpuigb aleixpuigb added new term request HCA/DCP Needed/useful for the Human Cell Atlas HuBMAP Needed/useful for HuBMAP labels Jan 13, 2025
@aleixpuigb aleixpuigb added this to the Milestone 20/01/2025 milestone Jan 13, 2025
aleixpuigb added a commit that referenced this issue Jan 14, 2025
@aleixpuigb
Fixes #2892 NTR diffuse bipolar 4a and 4b cells
3981704 
Fixes #2892 NTR diffuse bipolar 4a and 4b cells
The higly expressed genes are not added in logical axioms waiting for HCA feedback and NS-Forest markers.
@aleixpuigb aleixpuigb mentioned this issue Jan 14, 2025
Merged
@github-project-automation github-project-automation bot moved this from To Do to Done in CL_wtgc_ticket_tracker Jan 17, 2025
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@aleixpuigb aleixpuigb

Labels
HCA/DCP Needed/useful for the Human Cell Atlas HuBMAP Needed/useful for HuBMAP new term request
Projects
CL_wtgc_ticket_tracker
Status: Done
Milestone
Milestone 20/01/2025
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Fixes #2892 NTR diffuse bipolar 4a and 4b cells obophenotype/cell-ontology
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@aleixpuigb