Fixes #2892 NTR diffuse bipolar 4a and 4b cells

[aleixpuigb]

Fixes #2892 NTR diffuse bipolar 4a and 4b cells
The higly expressed genes are not added in logical axioms waiting for HCA feedback and NS-Forest markers.

[aleixpuigb]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-16/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-16/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

diffuse bipolar 4a cell http://purl.obolibrary.org/obo/CL_4033095

Added

• diffuse bipolar 4a cell label "diffuse bipolar 4a cell"

• diffuse bipolar 4a cell IAO_0000115 "An ON bipolar cell that has high expression of DIRC3, KCNJ3, LINC01915, PTPRK compared with other bipolar cells."

  • hasDbXref "PMID:31995762"

  • hasDbXref "doi:10.1101/2023.11.07.566105"

• diffuse bipolar 4a cell contributor 0000-0001-6677-8489

• diffuse bipolar 4a cell hasRelatedSynonym "DB4a"

  • hasSynonymType OMO_0003000

  • hasDbXref "doi:10.1101/2023.11.07.566105"

• diffuse bipolar 4a cell date "2025-01-14T13:48:42Z"^^dateTime

• Class: diffuse bipolar 4a cell

• diffuse bipolar 4a cell SubClassOf RO_0002162 some NCBITaxon_9606

• diffuse bipolar 4a cell SubClassOf ON-bipolar cell

• diffuse bipolar 4a cell SubClassOf BFO_0000002

diffuse bipolar 4b cell http://purl.obolibrary.org/obo/CL_4033096

Added

• diffuse bipolar 4b cell date "2025-01-14T13:49:08Z"^^dateTime

• diffuse bipolar 4b cell hasRelatedSynonym "DB4b"

  • hasSynonymType OMO_0003000

  • hasDbXref "doi:10.1101/2023.11.07.566105"

• diffuse bipolar 4b cell contributor 0000-0001-6677-8489

• diffuse bipolar 4b cell label "diffuse bipolar 4b cell"

• diffuse bipolar 4b cell IAO_0000115 "An ON bipolar cell that has high expression of NOS1AP compared with other bipolar cells."

  • hasDbXref "PMID:31995762"

  • hasDbXref "doi:10.1101/2023.11.07.566105"

• Class: diffuse bipolar 4b cell

• diffuse bipolar 4b cell SubClassOf ON-bipolar cell

• diffuse bipolar 4b cell SubClassOf BFO_0000002

• diffuse bipolar 4b cell SubClassOf RO_0002162 some NCBITaxon_9606

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

diffuse bipolar 4a cell http://purl.obolibrary.org/obo/CL_4033095

Added

• diffuse bipolar 4a cell label "diffuse bipolar 4a cell"

• diffuse bipolar 4a cell definition "An ON bipolar cell that has high expression of DIRC3, KCNJ3, LINC01915, PTPRK compared with other bipolar cells."

  • has cross-reference "doi:10.1101/2023.11.07.566105"

  • has cross-reference "PMID:31995762"

• diffuse bipolar 4a cell contributor 0000-0001-6677-8489

• diffuse bipolar 4a cell has_related_synonym "DB4a"

  • has_synonym_type abbreviation

  • has cross-reference "doi:10.1101/2023.11.07.566105"

• diffuse bipolar 4a cell date "2025-01-14T13:48:42Z"^^dateTime

• Class: diffuse bipolar 4a cell

• diffuse bipolar 4a cell SubClassOf in taxon some Homo sapiens

• diffuse bipolar 4a cell SubClassOf ON-bipolar cell

diffuse bipolar 4b cell http://purl.obolibrary.org/obo/CL_4033096

Added

• diffuse bipolar 4b cell date "2025-01-14T13:49:08Z"^^dateTime

• diffuse bipolar 4b cell has_related_synonym "DB4b"

  • has_synonym_type abbreviation

  • has cross-reference "doi:10.1101/2023.11.07.566105"

• diffuse bipolar 4b cell contributor 0000-0001-6677-8489

• diffuse bipolar 4b cell label "diffuse bipolar 4b cell"

• diffuse bipolar 4b cell definition "An ON bipolar cell that has high expression of NOS1AP compared with other bipolar cells."

  • has cross-reference "doi:10.1101/2023.11.07.566105"

  • has cross-reference "PMID:31995762"

• Class: diffuse bipolar 4b cell

• diffuse bipolar 4b cell SubClassOf ON-bipolar cell

• diffuse bipolar 4b cell SubClassOf in taxon some Homo sapiens

[Caroline-99]

Everything looks good.