Fixes #2906 NTR- tuft cell of duodenum

[Caroline-99]

Fixes #2906

Added a new term with textual and logical defs and references

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-16/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-16/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

tuft cell of duodenum http://purl.obolibrary.org/obo/CL_4052033

Added

• tuft cell of duodenum comment "In pediatric celiac disease and duodenal ulcers, duodenal tuft cell numbers are significantly reduced compared to healthy controls, suggesting that their loss may contribute to prolonged inflammation and compromised mucosal integrity. In acute duodenitis, tuft cell counts vary, with severe inflammation linked to lower numbers."

  • hasDbXref "PMID:32307399"

• tuft cell of duodenum IAO_0000115 "A tuft cell that is part of the duodenal epithelium. This cell contributes to mucosal defense by acting as a chemosensory sentinel, detecting luminal stimuli (Akiba et al., 2020). Its presence in the duodenum suggests a potential role in protecting the mucosa from acidic content coming from the stomach Gerbe et al., 2012)."

  • hasDbXref "PMID:32307399"

  • hasDbXref "PMID:22527717"

  • hasDbXref "PMID:32925177"

• tuft cell of duodenum contributor 0009-0000-8480-9277

• tuft cell of duodenum label "tuft cell of duodenum"

• tuft cell of duodenum date "2025-01-16T10:37:49Z"^^dateTime

• tuft cell of duodenum hasExactSynonym "tuft cell of duodenal epithelium"

• tuft cell of duodenum hasExactSynonym "duodenal tuft cell"

  • hasDbXref "PMID:32307399"

• Class: tuft cell of duodenum

• tuft cell of duodenum EquivalentTo brush cell and (BFO_0000050 some UBERON_0008346)

• tuft cell of duodenum SubClassOf tuft cell of small intestine

• tuft cell of duodenum SubClassOf BFO_0000050 some UBERON_0008346

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

tuft cell of duodenum http://purl.obolibrary.org/obo/CL_4052033

Added

• tuft cell of duodenum comment "In pediatric celiac disease and duodenal ulcers, duodenal tuft cell numbers are significantly reduced compared to healthy controls, suggesting that their loss may contribute to prolonged inflammation and compromised mucosal integrity. In acute duodenitis, tuft cell counts vary, with severe inflammation linked to lower numbers."

  • has cross-reference "PMID:32307399"

• tuft cell of duodenum definition "A tuft cell that is part of the duodenal epithelium. This cell contributes to mucosal defense by acting as a chemosensory sentinel, detecting luminal stimuli (Akiba et al., 2020). Its presence in the duodenum suggests a potential role in protecting the mucosa from acidic content coming from the stomach Gerbe et al., 2012)."

  • has cross-reference "PMID:22527717"

  • has cross-reference "PMID:32925177"

  • has cross-reference "PMID:32307399"

• tuft cell of duodenum contributor 0009-0000-8480-9277

• tuft cell of duodenum label "tuft cell of duodenum"

• tuft cell of duodenum date "2025-01-16T10:37:49Z"^^dateTime

• tuft cell of duodenum has exact synonym "tuft cell of duodenal epithelium"

• tuft cell of duodenum has exact synonym "duodenal tuft cell"

  • has cross-reference "PMID:32307399"

• Class: tuft cell of duodenum

• tuft cell of duodenum EquivalentTo brush cell and (part of some duodenal epithelium)

[Caroline-99]

This PR will be closed as the term tuft cell of small intestine is already in CL, so adding tuft cell of duodenum isn't necessary and would be redundant.