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Stomatogastric ganglion cell types of crabs, lobsters #2876

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Stomatogastric ganglion cell types of crabs, lobsters #2876

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f73b7f8
Create new_changes_CL
andreagaede Dec 19, 2024
ba0965e
Merge branch 'obophenotype:master' into stomatogastric_gagnglion_crab…
stevevanhooser Jan 6, 2025
305b313
Update new_changes_CL
stevevanhooser Jan 6, 2025
301fb69
new updates in owl language for stomatogastric ganglion of crabs and …
stevevanhooser Jan 7, 2025
562c014
cleaning so only edits to cl-edit.owl remain
stevevanhooser Jan 7, 2025
afa56d9
fixes during review
stevevanhooser Jan 7, 2025
e9170c7
Merge branch 'master' into stomatogastric_ganglion_crab_lobster
stevevanhooser Jan 7, 2025
54dd307
fixes during review 2
stevevanhooser Jan 7, 2025
2feed34
Merge branch 'stomatogastric_ganglion_crab_lobster' of https://github…
stevevanhooser Jan 7, 2025
79ea493
improved definition for lateral pyloric neuron, pyloric neuron
stevevanhooser Jan 7, 2025
eea1538
NCBITaxon_ corrected, changed SubClass to Annotation
stevevanhooser Jan 7, 2025
d3fa9b6
fix reintroduced NCBITaxon:
stevevanhooser Jan 7, 2025
282fd3b
change UBERON: to UBERON_
stevevanhooser Jan 7, 2025
2edca91
Import 'stomatogastric ganglion'
aleixpuigb Jan 31, 2025
ff56f17
Merge branch 'master' into pr/2876
aleixpuigb Jan 31, 2025
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1 change: 0 additions & 1 deletion src/ontology/CHANGES
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100 changes: 99 additions & 1 deletion src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3146,6 +3146,14 @@ Declaration(Class(obo:CL_4052030))
Declaration(Class(obo:CL_4052031))
Declaration(Class(obo:CL_4052048))
Declaration(Class(obo:CL_4052049))
Declaration(Class(obo:CL_4070010))
Declaration(Class(obo:CL_4070011))
Declaration(Class(obo:CL_4070012))
Declaration(Class(obo:CL_4070013))
Declaration(Class(obo:CL_4070014))
Declaration(Class(obo:CL_4070015))
Declaration(Class(obo:CL_4070016))
Declaration(Class(obo:CL_4070017))
Declaration(Class(obo:CP_0000000))
Declaration(Class(obo:CP_0000025))
Declaration(Class(obo:CP_0000027))
Expand Down Expand Up @@ -33507,6 +33515,96 @@ SubClassOf(obo:CL_4052049 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_001576
SubClassOf(obo:CL_4052049 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036376))
SubClassOf(obo:CL_4052049 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_1990573))

# Class: obo:CL_4070010 (gastric mill neuron)

AnnotationAssertion(rdfs:label obo:CL_4070010 "gastric mill neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070010 "GM")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI: 10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070010 "Medial tooth protraction: The medial tooth is moved forward by contraction of extrinsic muscles innervated by the GM neuron")
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EquivalentClasses(obo:CL_4070010 ObjectIntersectionOf(obo:CL_0000540 obo:CL_0000100))
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AnnotationAssertion(terms:contributor obo:CL_4070010 <https://orcid.org/0000-0002-1909-7004>)
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SubClassOf(obo:CL_4070010 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070010 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6752))
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SubClassOf(obo:CL_4070010 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON:8910001))
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# Class: obo:CL_4070011 (lateral gastric neuron)

AnnotationAssertion(rdfs:label obo:CL_4070011 "lateral gastric neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070011 "LG")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI: 10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070011 "Close lateral teeth: Contractions of the intrinsic muscle group, which is innervated by the LG neuron, close the lateral teeth.")
EquivalentClasses(obo:CL_4070011 ObjectIntersectionOf(obo:CL_0000540 obo:CL_0000100))
AnnotationAssertion(terms:contributor obo:CL_4070011 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070011 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070011 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070011 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON:8910001))

# Class: obo:CL_4070012 (inferior cardiac neuron)

AnnotationAssertion(rdfs:label obo:CL_4070012 "inferior cardiac neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070012 "IC")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI: 10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070012 "Control of ventral stomach grooves leading to pyloric filter: The IC neuron innervates muscles that govern opening and closing of the ventrolateral grooves of the cardiac sac. This,
in turn, means that these muscles may control the movement of liquified food to the pylorus.")
EquivalentClasses(obo:CL_4070012 ObjectIntersectionOf(obo:CL_0000540 obo:CL_0000100))
AnnotationAssertion(terms:contributor obo:CL_4070012 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070012 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070012 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070012 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON:8910001))

# Class: obo:CL_4070013 (ventricular dilator motor neurons)

AnnotationAssertion(rdfs:label obo:CL_4070013 "ventricular dilator motor neurons")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070013 "VD")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI: 10.1007/978-3-642-71516-7_2") obo:IAO_0000115 obo:CL_4070013 "Control of ventral stomach grooves leading to pyloric filter: The VD neuron innervates muscles (cv1) that govern opening and closing of the ventrolateral grooves of the cardiac sac. This, in turn, means that these muscles may control the movement of liquified food to the pylorus.")
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EquivalentClasses(obo:CL_4070013 ObjectIntersectionOf(obo:CL_0000540 obo:CL_0000100))
AnnotationAssertion(terms:contributor obo:CL_4070013 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070013 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070013 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070013 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON:8910001))

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# Class: obo:CL_4070014 (pyloric motor neuron)

AnnotationAssertion(rdfs:label obo:CL_4070014 "pyloric motor neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070014 "PY")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI: 10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID: 6296329") obo:IAO_0000115 obo:CL_4070014 "Pyloric filter movements: PY motor neurons are part of the pyloric central pattern generator. PY neurons have cellular properties that delay their post-inhibitory responses. When they fire, they inhibit IC and LP neurons, releasing the VD neuron from inhibition.")
EquivalentClasses(obo:CL_4070014 ObjectIntersectionOf(obo:CL_0000540 obo:CL_0000100))
AnnotationAssertion(terms:contributor obo:CL_4070014 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070014 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6712))
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SubClassOf(obo:CL_4070014 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070014 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON:8910001))

# Class: obo:CL_4070015 (pyloric dilator)

AnnotationAssertion(rdfs:label obo:CL_4070015 "pyloric dilator")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070015 "PD")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI: 10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID: 6296329") obo:IAO_0000115 obo:CL_4070015 "Part of pacemaker group; control of cardiopyloric valve")
EquivalentClasses(obo:CL_4070015 ObjectIntersectionOf(obo:CL_0000540 obo:CL_0000100))
AnnotationAssertion(terms:contributor obo:CL_4070015 <https://orcid.org/0000-0002-1909-7004>)
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SubClassOf(obo:CL_4070015 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070015 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070015 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON:8910001))

# Class: obo:CL_4070016 (anterior burster)

AnnotationAssertion(rdfs:label obo:CL_4070016 "anterior burster")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070016 "AB")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI: 10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID: 6296329") obo:IAO_0000115 obo:CL_4070016 "Pyloric pacemaker; feedback to commissural ganglia (CoG) neurons")
EquivalentClasses(obo:CL_4070016 ObjectIntersectionOf(obo:CL_0000540 obo:CL_0000099))
AnnotationAssertion(terms:contributor obo:CL_4070016 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070016 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6712))
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SubClassOf(obo:CL_4070016 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070016 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON:8910001))

# Class: obo:CL_4070017 (lateral pyloric motor neuron)

AnnotationAssertion(rdfs:label obo:CL_4070017 "lateral pyloric motor neuron")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4070017 "LP")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI: 10.1007/978-3-642-71516-7_2") Annotation(oboInOwl:hasDbXref "PMID: 6296329") obo:IAO_0000115 obo:CL_4070017 "Pyloric filter movements")
EquivalentClasses(obo:CL_4070017 ObjectIntersectionOf(obo:CL_0000540 obo:CL_0000100))
AnnotationAssertion(terms:contributor obo:CL_4070017 <https://orcid.org/0000-0002-1909-7004>)
SubClassOf(obo:CL_4070017 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6712))
SubClassOf(obo:CL_4070017 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon:6752))
SubClassOf(obo:CL_4070017 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON:8910001))


# Class: obo:CP_0000000 (obsolete CP:0000000)

AnnotationAssertion(obo:IAO_0100001 obo:CP_0000000 obo:CL_0017500)
Expand Down Expand Up @@ -33586,4 +33684,4 @@ SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000
SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000945)) obo:CL_0000164)
SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264)) obo:CL_0000164)
SubClassOf(Annotation(oboInOwl:hasDbXref <https://github.com/obophenotype/cell-ontology/issues/757>) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031))
)
)
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