Fixes #2959 - NTR tuft cell of urethra

[Caroline-99]

Fixes #2959

• NTR tuft cell of urethra
• Links to GO term - 'capable of' some 'positive regulation of smooth muscle contraction involved in micturition'

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-02-12/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-02-12/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

GO_1904320 http://purl.obolibrary.org/obo/GO_1904320

Added

• Class: GO_1904320

UBERON_0002325 http://purl.obolibrary.org/obo/UBERON_0002325

Added

• Class: UBERON_0002325

tuft cell of urethra http://purl.obolibrary.org/obo/CL_4052042

Added

• tuft cell of urethra hasExactSynonym "urethral cholinergic chemosensory cell"

  • hasDbXref "PMID:38548667"

• tuft cell of urethra date "2025-02-12T14:39:03Z"^^dateTime

• tuft cell of urethra label "tuft cell of urethra"

• tuft cell of urethra hasExactSynonym "urethral tuft cell"

  • hasDbXref "PMID:38548667"

• tuft cell of urethra IAO_0000115 "A tuft cell that is part of the epithelium of urethra. This cell monitors urethral contents by detecting chemical stimuli, such as bitter compounds and sugars. Upon activation, it releases acetylcholine (ACh), stimulating sensory nerve fibres and triggering detrusor muscle contraction, likely aiding in pathogen clearance by promoting bladder emptying."

  • hasDbXref "PMID:30379593"

  • hasDbXref "PMID:36993541"

  • hasDbXref "PMID:38548667"

• tuft cell of urethra hasExactSynonym "urethral brush cell"

  • hasDbXref "PMID:38548667"

• tuft cell of urethra contributor 0009-0000-8480-9277

• Class: tuft cell of urethra

• tuft cell of urethra EquivalentTo brush cell and (BFO_0000050 some UBERON_0002325)

• tuft cell of urethra SubClassOf BFO_0000050 some UBERON_0002325

• tuft cell of urethra SubClassOf RO_0002215 some GO_1904320

• tuft cell of urethra SubClassOf brush cell

• tuft cell of urethra SubClassOf epithelial cell of urethra

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl-edit.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl-edit.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

tuft cell of urethra http://purl.obolibrary.org/obo/CL_4052042

Added

• tuft cell of urethra has_exact_synonym "urethral cholinergic chemosensory cell"

  • database_cross_reference "PMID:38548667"

• tuft cell of urethra date "2025-02-12T14:39:03Z"^^dateTime

• tuft cell of urethra label "tuft cell of urethra"

• tuft cell of urethra has_exact_synonym "urethral tuft cell"

  • database_cross_reference "PMID:38548667"

• tuft cell of urethra definition "A tuft cell that is part of the epithelium of urethra. This cell monitors urethral contents by detecting chemical stimuli, such as bitter compounds and sugars. Upon activation, it releases acetylcholine (ACh), stimulating sensory nerve fibres and triggering detrusor muscle contraction, likely aiding in pathogen clearance by promoting bladder emptying."

  • database_cross_reference "PMID:38548667"

  • database_cross_reference "PMID:36993541"

  • database_cross_reference "PMID:30379593"

• tuft cell of urethra has_exact_synonym "urethral brush cell"

  • database_cross_reference "PMID:38548667"

• tuft cell of urethra contributor 0009-0000-8480-9277

• Class: tuft cell of urethra

• tuft cell of urethra EquivalentTo brush cell and (part of some epithelium of urethra)

• tuft cell of urethra SubClassOf capable of some positive regulation of smooth muscle contraction involved in micturition