full update 2024

docs/practicals/libs/header-attrs-2.28/header-attrs.js

@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});

docs/practicals/practical1.html

@@ -4,7 +4,7 @@
     <title>Practical 1</title>
     <meta charset="utf-8" />
     <meta name="author" content="Olivier Gimenez" />
-    <script src="libs/header-attrs-2.22/header-attrs.js"></script>
+    <script src="libs/header-attrs-2.28/header-attrs.js"></script>
     <link href="libs/remark-css-0.0.1/default.css" rel="stylesheet" />
     <link rel="stylesheet" href="slides-theme.css" type="text/css" />
   </head>
@@ -19,7 +19,7 @@
 ### Olivier Gimenez
 ]
 .date[
-### last updated: 2023-11-11
+### last updated: 2024-10-17
 ]
 
 ---

docs/practicals/practical2.html

@@ -4,7 +4,7 @@
     <title>Practical 2</title>
     <meta charset="utf-8" />
     <meta name="author" content="Olivier Gimenez" />
-    <script src="libs/header-attrs-2.22/header-attrs.js"></script>
+    <script src="libs/header-attrs-2.28/header-attrs.js"></script>
     <link href="libs/remark-css-0.0.1/default.css" rel="stylesheet" />
     <link rel="stylesheet" href="slides-theme.css" type="text/css" />
   </head>
@@ -19,7 +19,7 @@
 ### Olivier Gimenez
 ]
 .date[
-### last updated: 2023-11-11
+### last updated: 2024-10-17
 ]
 
 ---
@@ -31,7 +31,7 @@
 
 * Assume we have collected data on the height of 100 people:
 
-```r
+``` r
 # set seed for random numbers
 set.seed(2020)
 # simulate data from Normal distribution
@@ -59,7 +59,7 @@
 
 Function for likelihood of normal distribution w/ mean `\(\mu\)` and standard deviation `\(\sigma\)`:
 
-```r
+``` r
 negloglik &lt;- function(theta, data) {
   mu &lt;- theta[1]
   sigma &lt;- theta[2]
@@ -77,7 +77,7 @@
 
 * Minimiiiiiize
 
-```r
+``` r
 fit &lt;- optim(par = c(1,1), fn = negloglik, data = height)
 fit
 ```

docs/practicals/practical3.html

@@ -4,7 +4,7 @@
     <title>Practical 3</title>
     <meta charset="utf-8" />
     <meta name="author" content="Olivier Gimenez" />
-    <script src="libs/header-attrs-2.22/header-attrs.js"></script>
+    <script src="libs/header-attrs-2.28/header-attrs.js"></script>
     <link href="libs/remark-css-0.0.1/default.css" rel="stylesheet" />
     <link rel="stylesheet" href="slides-theme.css" type="text/css" />
   </head>
@@ -19,7 +19,7 @@
 ### Olivier Gimenez
 ]
 .date[
-### last updated: 2023-11-11
+### last updated: 2024-10-17
 ]
 
 ---
@@ -48,15 +48,15 @@
 
 .small-font[
 
-```r
+``` r
 (alpha &lt;- ( (1 - 0.57)/(0.073*0.073) - (1/0.57) )*0.57^2)
 ```
 
 ```
 ## [1] 25.64636
 ```
 
-```r
+``` r
 (beta &lt;- alpha * ( (1/0.57) - 1))
 ```
 
@@ -78,28 +78,28 @@
 # Solution
 
 
-```r
+``` r
 alpha &lt;- ( (1 - 0.57)/(0.073*0.073) - (1/0.57) )*0.57^2
 beta &lt;- alpha * ( (1/0.57) - 1)
 n &lt;- 10000
 samp &lt;- rbeta(n, alpha, beta)
 ```
 
 
-```r
+``` r
 (mu &lt;- mean(samp))
 ```
 
 ```
-## [1] 0.5699368
+## [1] 0.5716494
 ```
 
-```r
+``` r
 (sigma &lt;- sqrt(var(samp)))
 ```
 
 ```
-## [1] 0.07231072
+## [1] 0.07286554
 ```
 
     </textarea>

docs/practicals/practical4.html

@@ -4,7 +4,7 @@
     <title>Practical 4</title>
     <meta charset="utf-8" />
     <meta name="author" content="Olivier Gimenez" />
-    <script src="libs/header-attrs-2.22/header-attrs.js"></script>
+    <script src="libs/header-attrs-2.28/header-attrs.js"></script>
     <link href="libs/remark-css-0.0.1/default.css" rel="stylesheet" />
     <link rel="stylesheet" href="slides-theme.css" type="text/css" />
   </head>
@@ -19,7 +19,7 @@
 ### Olivier Gimenez
 ]
 .date[
-### last updated: 2023-11-11
+### last updated: 2024-10-17
 ]
 
 ---
@@ -45,7 +45,7 @@
 
 .center[
 
-```r
+``` r
 plot(density(rnorm(1000, 0, 1000)), main="", xlab="Height (m)")
 ```
 
@@ -59,7 +59,7 @@
 
 .center[
 
-```r
+``` r
 plot(density(rnorm(1000, 2, 0.5)), main="", xlab="Height (m)")
 ```
 
@@ -73,7 +73,7 @@
 
 .center[
 
-```r
+``` r
 plot(density(plogis(rnorm(1000,0,10)), from = 0, to = 1), main = '', xlab = 'survival')
 ```
 
@@ -87,7 +87,7 @@
 
 .center[
 
-```r
+``` r
 plot(density(plogis(rnorm(1000,0,1.5)), from = 0, to = 1), main = '', xlab = 'survival')
 ```
 

docs/practicals/practical5.html

@@ -4,7 +4,7 @@
     <title>Practical 5</title>
     <meta charset="utf-8" />
     <meta name="author" content="Olivier Gimenez" />
-    <script src="libs/header-attrs-2.22/header-attrs.js"></script>
+    <script src="libs/header-attrs-2.28/header-attrs.js"></script>
     <link href="libs/remark-css-0.0.1/default.css" rel="stylesheet" />
     <link rel="stylesheet" href="slides-theme.css" type="text/css" />
   </head>
@@ -19,7 +19,7 @@
 ### Olivier Gimenez
 ]
 .date[
-### last updated: 2023-11-11
+### last updated: 2024-10-17
 ]
 
 ---