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@taoliulab Tao Liu Lab at Roswell Park

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    11 repositories

    • taoliulab.github.io

      Public
      http://taoliulab.github.io or https://lab.biomisc.org/
      HTML
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • genomics-analysis-pipelines

      Public
      Pipeline codes for analyzing various genomics datasets
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•3•0•0•Updated Nov 2, 2020Nov 2, 2020

    • pHMMRATAC

      Public
      Python version HMMRATAC https://github.com/LiuLabUB/HMMRATAC
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 17, 2019Oct 17, 2019

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1k•0•0•0•Updated Aug 22, 2019Aug 22, 2019

    • biopython

      Public
      Official git repository for Biopython (converted from CVS)
      Python
      •
      Other
      •1.8k•0•0•0•Updated Aug 22, 2019Aug 22, 2019

    • MACS

      Public
      MACS -- Model-based Analysis of ChIP-Seq
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •270•0•0•0•Updated Aug 22, 2019Aug 22, 2019

    • HMMRATAC

      Public
      HMMRATAC peak caller for ATAC-seq data
      Java
      •22•0•0•0•Updated Aug 19, 2019Aug 19, 2019

    • chip-seq-pipeline2

      Public
      ENCODE ChIP-seq pipeline
      Python
      •
      MIT License
      •122•0•0•0•Updated Aug 12, 2019Aug 12, 2019

    • pyBigWig

      Public
      A python extension for quick access to bigWig and bigBed files
      C
      •
      MIT License
      •51•0•0•0•Updated Aug 5, 2019Aug 5, 2019

    • atac-seq-pipeline

      Public
      ENCODE ATAC-seq pipeline
      Python
      •
      MIT License
      •173•0•0•0•Updated Jul 30, 2019Jul 30, 2019

    • SAPPER

      Public
      SAPPER -- call variance from ChIP-Seq directly
      Python
      •3•0•0•0•Updated May 25, 2018May 25, 2018