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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,10 @@ | ||
| { | ||
| "tables": "pytables", | ||
| "pyiron-base": "pyiron_base", | ||
| "pyiron-atomistics": "pyiron_atomistics", | ||
| "pyiron-contrib": "pyiron_contrib", | ||
| "pyiron-experimental": "pyiron_experimental", | ||
| "pyiron-continuum": "pyiron_continuum", | ||
| "pyiron-gpl": "pyiron_gpl", | ||
| "pyiron-gui": "pyiron_gui" | ||
| { | ||
| "tables": "pytables", | ||
| "pyiron-base": "pyiron_base", | ||
| "pyiron-atomistics": "pyiron_atomistics", | ||
| "pyiron-contrib": "pyiron_contrib", | ||
| "pyiron-experimental": "pyiron_experimental", | ||
| "pyiron-continuum": "pyiron_continuum", | ||
| "pyiron-gpl": "pyiron_gpl", | ||
| "pyiron-gui": "pyiron_gui" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,72 +1,72 @@ | ||
| # coding: utf-8 | ||
| # Copyright (c) Max-Planck-Institut für Eisenforschung GmbH - Computational Materials Design (CM) Department | ||
| # Distributed under the terms of "New BSD License", see the LICENSE file. | ||
|
|
||
| import json | ||
| import re | ||
| import sys | ||
|
|
||
| import yaml | ||
|
|
||
| environment_file = '.ci_support/environment.yml' | ||
| name_mapping_file = '.ci_support/pypi_vs_conda_names.json' | ||
|
|
||
|
|
||
| class EnvironmentUpdater: | ||
| def __init__(self, package_name, from_version, to_version): | ||
| """ | ||
| Updates the version of a package in the conda environment file. | ||
| Parameters: | ||
| package_name: Name of the package to update as available on PyPI | ||
| from_version: Version the package is before the update | ||
| to_version: Version to which the package should be updated | ||
| """ | ||
| self.from_version = from_version | ||
| self.to_version = to_version | ||
| with open(name_mapping_file, 'r') as f: | ||
| self._name_conversion_dict = json.load(f) | ||
|
|
||
| with open(environment_file, 'r') as f: | ||
| self.environment = yaml.safe_load(f) | ||
|
|
||
| self.package_name = self._convert_package_name(package_name) | ||
|
|
||
| def _convert_package_name(self, name): | ||
| if name in self._name_conversion_dict.keys(): | ||
| result = self._name_conversion_dict[name] | ||
| else: | ||
| result = name | ||
| return result | ||
|
|
||
| def _update_dependencies(self): | ||
| updated_dependencies = [] | ||
|
|
||
| for dep in self.environment['dependencies']: | ||
| updated_dependencies.append(re.sub( | ||
| r'(' + self.package_name + '.*)' + self.from_version, | ||
| r'\g<1>' + self.to_version, | ||
| dep | ||
| )) | ||
|
|
||
| self.environment['dependencies'] = updated_dependencies | ||
|
|
||
| def _write(self): | ||
| with open(environment_file, 'w') as f: | ||
| yaml.safe_dump(self.environment, f) | ||
|
|
||
| def update_dependencies(self): | ||
| """Update the version of the requested dependency in the environment file""" | ||
| self._update_dependencies() | ||
| self._write() | ||
|
|
||
|
|
||
| if len(sys.argv) != 7 or not (sys.argv[1] == 'Bump' and sys.argv[3] == 'from' and sys.argv[5] == 'to'): | ||
| raise ValueError(f"Title of a dependabot PR 'Bump <package> from <version> to <version>' expected, " | ||
| f"but got {' '.join(sys.argv[1:])}") | ||
| package_to_update = sys.argv[2] | ||
| from_version = sys.argv[4] | ||
| to_version = sys.argv[6] | ||
|
|
||
| updater = EnvironmentUpdater(package_to_update, from_version, to_version) | ||
| updater.update_dependencies() | ||
| # coding: utf-8 | ||
| # Copyright (c) Max-Planck-Institut für Eisenforschung GmbH - Computational Materials Design (CM) Department | ||
| # Distributed under the terms of "New BSD License", see the LICENSE file. | ||
|
|
||
| import json | ||
| import re | ||
| import sys | ||
|
|
||
| import yaml | ||
|
|
||
| environment_file = '.ci_support/environment.yml' | ||
| name_mapping_file = '.ci_support/pypi_vs_conda_names.json' | ||
|
|
||
|
|
||
| class EnvironmentUpdater: | ||
| def __init__(self, package_name, from_version, to_version): | ||
| """ | ||
| Updates the version of a package in the conda environment file. | ||
| Parameters: | ||
| package_name: Name of the package to update as available on PyPI | ||
| from_version: Version the package is before the update | ||
| to_version: Version to which the package should be updated | ||
| """ | ||
| self.from_version = from_version | ||
| self.to_version = to_version | ||
| with open(name_mapping_file, 'r') as f: | ||
| self._name_conversion_dict = json.load(f) | ||
|
|
||
| with open(environment_file, 'r') as f: | ||
| self.environment = yaml.safe_load(f) | ||
|
|
||
| self.package_name = self._convert_package_name(package_name) | ||
|
|
||
| def _convert_package_name(self, name): | ||
| if name in self._name_conversion_dict.keys(): | ||
| result = self._name_conversion_dict[name] | ||
| else: | ||
| result = name | ||
| return result | ||
|
|
||
| def _update_dependencies(self): | ||
| updated_dependencies = [] | ||
|
|
||
| for dep in self.environment['dependencies']: | ||
| updated_dependencies.append(re.sub( | ||
| r'(' + self.package_name + '.*)' + self.from_version, | ||
| r'\g<1>' + self.to_version, | ||
| dep | ||
| )) | ||
|
|
||
| self.environment['dependencies'] = updated_dependencies | ||
|
|
||
| def _write(self): | ||
| with open(environment_file, 'w') as f: | ||
| yaml.safe_dump(self.environment, f) | ||
|
|
||
| def update_dependencies(self): | ||
| """Update the version of the requested dependency in the environment file""" | ||
| self._update_dependencies() | ||
| self._write() | ||
|
|
||
|
|
||
| if len(sys.argv) != 7 or not (sys.argv[1] == 'Bump' and sys.argv[3] == 'from' and sys.argv[5] == 'to'): | ||
| raise ValueError(f"Title of a dependabot PR 'Bump <package> from <version> to <version>' expected, " | ||
| f"but got {' '.join(sys.argv[1:])}") | ||
| package_to_update = sys.argv[2] | ||
| from_version = sys.argv[4] | ||
| to_version = sys.argv[6] | ||
|
|
||
| updater = EnvironmentUpdater(package_to_update, from_version, to_version) | ||
| updater.update_dependencies() |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,30 +1,30 @@ | ||
| name: UpdateDependabotPR | ||
|
|
||
| on: | ||
| pull_request_target: | ||
| branches: [ master ] | ||
|
|
||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| if: (github.actor == 'dependabot[bot]') | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| ref: ${{ github.event.pull_request.head.ref }} # Check out the head of the actual branch, not the PR | ||
| fetch-depth: 0 # otherwise, you will fail to push refs to dest repo | ||
| token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }} | ||
| - name: UpdateEnvironmentFile | ||
| shell: bash -l {0} | ||
| run: | | ||
| python .ci_support/update_environment.py ${{ github.event.pull_request.title }} | ||
| - name: UpdateDependabotPR commit | ||
| run: | | ||
| git config --local user.email "[email protected]" | ||
| git config --local user.name "pyiron-runner" | ||
| git commit -m "[dependabot skip] Update environment" -a | ||
| - name: UpdateDependabotPR push | ||
| uses: ad-m/github-push-action@master | ||
| with: | ||
| github_token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }} | ||
| branch: ${{ github.event.pull_request.head.ref }} | ||
| name: UpdateDependabotPR | ||
|
|
||
| on: | ||
| pull_request_target: | ||
| branches: [ master ] | ||
|
|
||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| if: (github.actor == 'dependabot[bot]') | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| ref: ${{ github.event.pull_request.head.ref }} # Check out the head of the actual branch, not the PR | ||
| fetch-depth: 0 # otherwise, you will fail to push refs to dest repo | ||
| token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }} | ||
| - name: UpdateEnvironmentFile | ||
| shell: bash -l {0} | ||
| run: | | ||
| python .ci_support/update_environment.py ${{ github.event.pull_request.title }} | ||
| - name: UpdateDependabotPR commit | ||
| run: | | ||
| git config --local user.email "[email protected]" | ||
| git config --local user.name "pyiron-runner" | ||
| git commit -m "[dependabot skip] Update environment" -a | ||
| - name: UpdateDependabotPR push | ||
| uses: ad-m/github-push-action@master | ||
| with: | ||
| github_token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }} | ||
| branch: ${{ github.event.pull_request.head.ref }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,76 +1,76 @@ | ||
| # Contributor Covenant Code of Conduct | ||
|
|
||
| ## Our Pledge | ||
|
|
||
| In the interest of fostering an open and welcoming environment, we as | ||
| contributors and maintainers pledge to making participation in our project and | ||
| our community a harassment-free experience for everyone, regardless of age, body | ||
| size, disability, ethnicity, sex characteristics, gender identity and expression, | ||
| level of experience, education, socio-economic status, nationality, personal | ||
| appearance, race, religion, or sexual identity and orientation. | ||
|
|
||
| ## Our Standards | ||
|
|
||
| Examples of behavior that contributes to creating a positive environment | ||
| include: | ||
|
|
||
| * Using welcoming and inclusive language | ||
| * Being respectful of differing viewpoints and experiences | ||
| * Gracefully accepting constructive criticism | ||
| * Focusing on what is best for the community | ||
| * Showing empathy towards other community members | ||
|
|
||
| Examples of unacceptable behavior by participants include: | ||
|
|
||
| * The use of sexualized language or imagery and unwelcome sexual attention or | ||
| advances | ||
| * Trolling, insulting/derogatory comments, and personal or political attacks | ||
| * Public or private harassment | ||
| * Publishing others' private information, such as a physical or electronic | ||
| address, without explicit permission | ||
| * Other conduct which could reasonably be considered inappropriate in a | ||
| professional setting | ||
|
|
||
| ## Our Responsibilities | ||
|
|
||
| Project maintainers are responsible for clarifying the standards of acceptable | ||
| behavior and are expected to take appropriate and fair corrective action in | ||
| response to any instances of unacceptable behavior. | ||
|
|
||
| Project maintainers have the right and responsibility to remove, edit, or | ||
| reject comments, commits, code, wiki edits, issues, and other contributions | ||
| that are not aligned to this Code of Conduct, or to ban temporarily or | ||
| permanently any contributor for other behaviors that they deem inappropriate, | ||
| threatening, offensive, or harmful. | ||
|
|
||
| ## Scope | ||
|
|
||
| This Code of Conduct applies both within project spaces and in public spaces | ||
| when an individual is representing the project or its community. Examples of | ||
| representing a project or community include using an official project e-mail | ||
| address, posting via an official social media account, or acting as an appointed | ||
| representative at an online or offline event. Representation of a project may be | ||
| further defined and clarified by project maintainers. | ||
|
|
||
| ## Enforcement | ||
|
|
||
| Instances of abusive, harassing, or otherwise unacceptable behavior may be | ||
| reported by contacting the project team at [email protected]. All | ||
| complaints will be reviewed and investigated and will result in a response that | ||
| is deemed necessary and appropriate to the circumstances. The project team is | ||
| obligated to maintain confidentiality with regard to the reporter of an incident. | ||
| Further details of specific enforcement policies may be posted separately. | ||
|
|
||
| Project maintainers who do not follow or enforce the Code of Conduct in good | ||
| faith may face temporary or permanent repercussions as determined by other | ||
| members of the project's leadership. | ||
|
|
||
| ## Attribution | ||
|
|
||
| This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4, | ||
| available at https://www.contributor-covenant.org/version/1/4/code-of-conduct.html | ||
|
|
||
| [homepage]: https://www.contributor-covenant.org | ||
|
|
||
| For answers to common questions about this code of conduct, see | ||
| https://www.contributor-covenant.org/faq | ||
| # Contributor Covenant Code of Conduct | ||
|
|
||
| ## Our Pledge | ||
|
|
||
| In the interest of fostering an open and welcoming environment, we as | ||
| contributors and maintainers pledge to making participation in our project and | ||
| our community a harassment-free experience for everyone, regardless of age, body | ||
| size, disability, ethnicity, sex characteristics, gender identity and expression, | ||
| level of experience, education, socio-economic status, nationality, personal | ||
| appearance, race, religion, or sexual identity and orientation. | ||
|
|
||
| ## Our Standards | ||
|
|
||
| Examples of behavior that contributes to creating a positive environment | ||
| include: | ||
|
|
||
| * Using welcoming and inclusive language | ||
| * Being respectful of differing viewpoints and experiences | ||
| * Gracefully accepting constructive criticism | ||
| * Focusing on what is best for the community | ||
| * Showing empathy towards other community members | ||
|
|
||
| Examples of unacceptable behavior by participants include: | ||
|
|
||
| * The use of sexualized language or imagery and unwelcome sexual attention or | ||
| advances | ||
| * Trolling, insulting/derogatory comments, and personal or political attacks | ||
| * Public or private harassment | ||
| * Publishing others' private information, such as a physical or electronic | ||
| address, without explicit permission | ||
| * Other conduct which could reasonably be considered inappropriate in a | ||
| professional setting | ||
|
|
||
| ## Our Responsibilities | ||
|
|
||
| Project maintainers are responsible for clarifying the standards of acceptable | ||
| behavior and are expected to take appropriate and fair corrective action in | ||
| response to any instances of unacceptable behavior. | ||
|
|
||
| Project maintainers have the right and responsibility to remove, edit, or | ||
| reject comments, commits, code, wiki edits, issues, and other contributions | ||
| that are not aligned to this Code of Conduct, or to ban temporarily or | ||
| permanently any contributor for other behaviors that they deem inappropriate, | ||
| threatening, offensive, or harmful. | ||
|
|
||
| ## Scope | ||
|
|
||
| This Code of Conduct applies both within project spaces and in public spaces | ||
| when an individual is representing the project or its community. Examples of | ||
| representing a project or community include using an official project e-mail | ||
| address, posting via an official social media account, or acting as an appointed | ||
| representative at an online or offline event. Representation of a project may be | ||
| further defined and clarified by project maintainers. | ||
|
|
||
| ## Enforcement | ||
|
|
||
| Instances of abusive, harassing, or otherwise unacceptable behavior may be | ||
| reported by contacting the project team at [email protected]. All | ||
| complaints will be reviewed and investigated and will result in a response that | ||
| is deemed necessary and appropriate to the circumstances. The project team is | ||
| obligated to maintain confidentiality with regard to the reporter of an incident. | ||
| Further details of specific enforcement policies may be posted separately. | ||
|
|
||
| Project maintainers who do not follow or enforce the Code of Conduct in good | ||
| faith may face temporary or permanent repercussions as determined by other | ||
| members of the project's leadership. | ||
|
|
||
| ## Attribution | ||
|
|
||
| This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4, | ||
| available at https://www.contributor-covenant.org/version/1/4/code-of-conduct.html | ||
|
|
||
| [homepage]: https://www.contributor-covenant.org | ||
|
|
||
| For answers to common questions about this code of conduct, see | ||
| https://www.contributor-covenant.org/faq |
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