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q2cli

A click-based command line interface for QIIME 2.

Installation and usage

To try q2cli, check out the Installing and using QIIME 2 demo.

Enabling Bash tab completion

To enable tab completion in Bash, run the following command or add it to your .bashrc/.bash_profile:

eval "$(_QIIME_COMPLETE=source qiime)"

Note: tab completion is currently VERY slow, track progress on #6.