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Pandas-friendly column names #443

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merged 16 commits into from
Dec 8, 2024
Merged

Pandas-friendly column names #443

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fe1e564
CI95% --> CI95
remrama Oct 6, 2024
b930822
p-* --> p_* (also U-* and W-*)
remrama Oct 7, 2024
1c8694e
CI[97.5%] --> CI97.5
remrama Oct 7, 2024
88cafad
mean(A) --> mean_A (also std)
remrama Oct 7, 2024
c6f0b26
T-test --> T_test (index)
remrama Oct 7, 2024
ef8b121
effect sizes
remrama Oct 7, 2024
5621253
updated notebooks
remrama Oct 8, 2024
a3fa6fb
Fix the Github Action CI for Python tests (#445)
remrama Oct 9, 2024
2e6a48c
CI95% --> CI95
remrama Oct 6, 2024
b244732
p-* --> p_* (also U-* and W-*)
remrama Oct 7, 2024
5c56bff
CI[97.5%] --> CI97.5
remrama Oct 7, 2024
fffab87
mean(A) --> mean_A (also std)
remrama Oct 7, 2024
d55a3db
T-test --> T_test (index)
remrama Oct 7, 2024
8416be5
effect sizes
remrama Oct 7, 2024
6a88cd1
updated notebooks
remrama Oct 8, 2024
df3b65b
Merge branch 'remrama/issue208' of https://github.com/remrama/pingoui…
remrama Oct 9, 2024
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14 changes: 7 additions & 7 deletions .github/workflows/python_tests.yml
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -2,9 +2,9 @@ name: Python tests

on:
push:
branches: [master, develop]
branches: [main]
pull_request:
branches: [master, develop]
branches: [main]

jobs:
build:
Expand All @@ -20,10 +20,10 @@ jobs:
FORCE_COLOR: true

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v1
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}

Expand All @@ -39,20 +39,20 @@ jobs:
- name: Build docs
if: ${{ matrix.platform == 'ubuntu-latest' && matrix.python-version == 3.9 }}
run: |
pip install --upgrade sphinx sphinx_bootstrap_theme numpydoc sphinx-copybutton sphinx-panels
pip install .[docs]
make -C docs clean
make -C docs html

- name: Upload doc build artifacts
if: ${{ matrix.platform == 'ubuntu-latest' && matrix.python-version == 3.9 }}
uses: actions/upload-artifact@v1
uses: actions/upload-artifact@v4
with:
name: docs-artifact
path: docs/build/html

- name: Upload coverage report
if: ${{ matrix.platform == 'ubuntu-latest' && matrix.python-version == 3.9 }}
uses: codecov/codecov-action@v1
uses: codecov/codecov-action@v4
with:
token: c6ed6ca6-a040-4f23-9ebf-8c474c998097
file: ./coverage.xml
20 changes: 10 additions & 10 deletions README.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -157,7 +157,7 @@ Click on the link below and navigate to the notebooks/ folder to run a collectio
:widths: auto

====== ===== ============= ======= ============= ========= ====== =======
T dof alternative p-val CI95% cohen-d BF10 power
T dof alternative p_val CI95 cohen_d BF10 power
====== ===== ============= ======= ============= ========= ====== =======
-3.401 58 two-sided 0.001 [-1.68 -0.43] 0.878 26.155 0.917
====== ===== ============= ======= ============= ========= ====== =======
Expand All @@ -175,7 +175,7 @@ Click on the link below and navigate to the notebooks/ folder to run a collectio
:widths: auto

=== ===== =========== ======= ====== =======
n r CI95% p-val BF10 power
n r CI95 p_val BF10 power
=== ===== =========== ======= ====== =======
30 0.595 [0.3 0.79] 0.001 69.723 0.950
=== ===== =========== ======= ====== =======
Expand All @@ -196,7 +196,7 @@ Click on the link below and navigate to the notebooks/ folder to run a collectio
:widths: auto

=== ===== =========== ======= =======
n r CI95% p-val power
n r CI95 p_val power
=== ===== =========== ======= =======
30 0.576 [0.27 0.78] 0.001 0.933
=== ===== =========== ======= =======
Expand Down Expand Up @@ -244,7 +244,7 @@ The `pingouin.normality` function works with lists, arrays, or pandas DataFrame
:widths: auto

======== ======= ==== ===== ======= ======= =======
Source SS DF MS F p-unc np2
Source SS DF MS F p_unc np2
======== ======= ==== ===== ======= ======= =======
Group 5.460 1 5.460 5.244 0.023 0.029
Within 185.343 178 1.041 nan nan nan
Expand All @@ -263,7 +263,7 @@ The `pingouin.normality` function works with lists, arrays, or pandas DataFrame
:widths: auto

======== ======= ==== ===== ======= ======= ======= =======
Source SS DF MS F p-unc ng2 eps
Source SS DF MS F p_unc ng2 eps
======== ======= ==== ===== ======= ======= ======= =======
Time 7.628 2 3.814 3.913 0.023 0.04 0.999
Error 115.027 118 0.975 nan nan nan nan
Expand All @@ -287,7 +287,7 @@ The `pingouin.normality` function works with lists, arrays, or pandas DataFrame
:widths: auto

========== ======= ======= ======== ============ ====== ====== ============= ======= ======== ========== ====== ========
Contrast A B Paired Parametric T dof alternative p-unc p-corr p-adjust BF10 hedges
Contrast A B Paired Parametric T dof alternative p_unc p_corr p_adjust BF10 hedges
========== ======= ======= ======== ============ ====== ====== ============= ======= ======== ========== ====== ========
Time August January True True -1.740 59.000 two-sided 0.087 0.131 fdr_bh 0.582 -0.328
Time August June True True -2.743 59.000 two-sided 0.008 0.024 fdr_bh 4.232 -0.483
Expand All @@ -310,7 +310,7 @@ The `pingouin.normality` function works with lists, arrays, or pandas DataFrame
:widths: auto

=========== ===== ===== ===== ===== ===== ======= ===== =======
Source SS DF1 DF2 MS F p-unc np2 eps
Source SS DF1 DF2 MS F p_unc np2 eps
=========== ===== ===== ===== ===== ===== ======= ===== =======
Group 5.460 1 58 5.460 5.052 0.028 0.080 nan
Time 7.628 2 116 3.814 4.027 0.020 0.065 0.999
Expand All @@ -334,7 +334,7 @@ The `pingouin.normality` function works with lists, arrays, or pandas DataFrame
:widths: auto

=== === ======== ============= === ===== ============= ======= ====== =======
X Y method alternative n r CI95% p-unc BF10 power
X Y method alternative n r CI95 p_unc BF10 power
=== === ======== ============= === ===== ============= ======= ====== =======
X Y pearson two-sided 30 0.366 [0.01 0.64] 0.047 1.500 0.525
X Z pearson two-sided 30 0.251 [-0.12 0.56] 0.181 0.534 0.272
Expand Down Expand Up @@ -374,7 +374,7 @@ The `pingouin.normality` function works with lists, arrays, or pandas DataFrame
:widths: auto

========= ====== ===== ====== ====== ===== ======== ========== ===========
names coef se T pval r2 adj_r2 CI[2.5%] CI[97.5%]
names coef se T pval r2 adj_r2 CI2.5 CI97.5
========= ====== ===== ====== ====== ===== ======== ========== ===========
Intercept 4.650 0.841 5.530 0.000 0.139 0.076 2.925 6.376
X 0.143 0.068 2.089 0.046 0.139 0.076 0.003 0.283
Expand All @@ -394,7 +394,7 @@ The `pingouin.normality` function works with lists, arrays, or pandas DataFrame
:widths: auto

======== ====== ===== ====== ========== =========== =====
path coef se pval CI[2.5%] CI[97.5%] sig
path coef se pval CI2.5 CI97.5 sig
======== ====== ===== ====== ========== =========== =====
Z ~ X 0.103 0.075 0.181 -0.051 0.256 No
Y ~ Z 0.018 0.171 0.916 -0.332 0.369 No
Expand Down
2 changes: 1 addition & 1 deletion docs/contributing.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -80,7 +80,7 @@ To inspect these build artifacts, follow these steps:

Screenshot of the GitHub checks dropdown menu

* Click on the check that starts with ``Python tests / build (ubuntu-latest, 3.8)``
* Click on the check that starts with ``Python tests / build (ubuntu-latest, 3.9)``
* Now in the top right corner of the opening window, you will see a small dropdown menu called "Artifacts"

.. figure:: /pictures/github_build_artifacts.png
Expand Down
20 changes: 10 additions & 10 deletions docs/index.rst
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -135,7 +135,7 @@ Quick start
:widths: auto

====== ===== ============= ======= ============= ========= ====== =======
T dof alternative p-val CI95% cohen-d BF10 power
T dof alternative p_val CI95 cohen_d BF10 power
====== ===== ============= ======= ============= ========= ====== =======
-3.401 58 two-sided 0.001 [-1.68 -0.43] 0.878 26.155 0.917
====== ===== ============= ======= ============= ========= ====== =======
Expand All @@ -153,7 +153,7 @@ Quick start
:widths: auto

=== ===== =========== ======= ====== =======
n r CI95% p-val BF10 power
n r CI95 p_val BF10 power
=== ===== =========== ======= ====== =======
30 0.595 [0.3 0.79] 0.001 69.723 0.950
=== ===== =========== ======= ====== =======
Expand All @@ -174,7 +174,7 @@ Quick start
:widths: auto

=== ===== =========== ======= =======
n r CI95% p-val power
n r CI95 p_val power
=== ===== =========== ======= =======
30 0.576 [0.27 0.78] 0.001 0.933
=== ===== =========== ======= =======
Expand Down Expand Up @@ -235,7 +235,7 @@ The :py:func:`pingouin.normality` function works with lists, arrays, or pandas D
:widths: auto

======== ======= ==== ===== ======= ======= =======
Source SS DF MS F p-unc np2
Source SS DF MS F p_unc np2
======== ======= ==== ===== ======= ======= =======
Group 5.460 1 5.460 5.244 0.023 0.029
Within 185.343 178 1.041 nan nan nan
Expand All @@ -254,7 +254,7 @@ The :py:func:`pingouin.normality` function works with lists, arrays, or pandas D
:widths: auto

======== ======= ==== ===== ======= ======= ======= =======
Source SS DF MS F p-unc ng2 eps
Source SS DF MS F p_unc ng2 eps
======== ======= ==== ===== ======= ======= ======= =======
Time 7.628 2 3.814 3.913 0.023 0.04 0.999
Error 115.027 118 0.975 nan nan nan nan
Expand All @@ -278,7 +278,7 @@ The :py:func:`pingouin.normality` function works with lists, arrays, or pandas D
:widths: auto

========== ======= ======= ======== ============ ====== ====== ============= ======= ======== ========== ====== ========
Contrast A B Paired Parametric T dof alternative p-unc p-corr p-adjust BF10 hedges
Contrast A B Paired Parametric T dof alternative p_unc p_corr p_adjust BF10 hedges
========== ======= ======= ======== ============ ====== ====== ============= ======= ======== ========== ====== ========
Time August January True True -1.740 59.000 two-sided 0.087 0.131 fdr_bh 0.582 -0.328
Time August June True True -2.743 59.000 two-sided 0.008 0.024 fdr_bh 4.232 -0.483
Expand All @@ -301,7 +301,7 @@ The :py:func:`pingouin.normality` function works with lists, arrays, or pandas D
:widths: auto

=========== ===== ===== ===== ===== ===== ======= ===== =======
Source SS DF1 DF2 MS F p-unc np2 eps
Source SS DF1 DF2 MS F p_unc np2 eps
=========== ===== ===== ===== ===== ===== ======= ===== =======
Group 5.460 1 58 5.460 5.052 0.028 0.080 nan
Time 7.628 2 116 3.814 4.027 0.020 0.065 0.999
Expand All @@ -325,7 +325,7 @@ The :py:func:`pingouin.normality` function works with lists, arrays, or pandas D
:widths: auto

=== === ======== ============= === ===== ============= ======= ====== =======
X Y method alternative n r CI95% p-unc BF10 power
X Y method alternative n r CI95 p_unc BF10 power
=== === ======== ============= === ===== ============= ======= ====== =======
X Y pearson two-sided 30 0.366 [0.01 0.64] 0.047 1.500 0.525
X Z pearson two-sided 30 0.251 [-0.12 0.56] 0.181 0.534 0.272
Expand Down Expand Up @@ -365,7 +365,7 @@ The :py:func:`pingouin.normality` function works with lists, arrays, or pandas D
:widths: auto

========= ====== ===== ====== ====== ===== ======== ========== ===========
names coef se T pval r2 adj_r2 CI[2.5%] CI[97.5%]
names coef se T pval r2 adj_r2 CI2.5 CI97.5
========= ====== ===== ====== ====== ===== ======== ========== ===========
Intercept 4.650 0.841 5.530 0.000 0.139 0.076 2.925 6.376
X 0.143 0.068 2.089 0.046 0.139 0.076 0.003 0.283
Expand All @@ -385,7 +385,7 @@ The :py:func:`pingouin.normality` function works with lists, arrays, or pandas D
:widths: auto

======== ====== ===== ====== ========== =========== =====
path coef se pval CI[2.5%] CI[97.5%] sig
path coef se pval CI2.5 CI97.5 sig
======== ====== ===== ====== ========== =========== =====
Z ~ X 0.103 0.075 0.181 -0.051 0.256 No
Y ~ Z 0.018 0.171 0.916 -0.332 0.369 No
Expand Down
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