added lysozyme

simongravelle · Dec 31, 2023 · 9b38219 · 9b38219
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diff --git a/docs/source/figures/illustrations/lysozyme-in-water/snapshot-dark.png b/docs/source/figures/illustrations/lysozyme-in-water/snapshot-dark.png
diff --git a/docs/source/figures/illustrations/lysozyme-in-water/snapshot-light.png b/docs/source/figures/illustrations/lysozyme-in-water/snapshot-light.png
diff --git a/docs/source/illustrations/bulk-water.rst b/docs/source/illustrations/bulk-water.rst
@@ -2,6 +2,10 @@
 Bulk water
 ==========
 
+.. container:: hatnote
+
+   Measuring the NMR relaxation time of water
+
 MD system
 ---------
 

diff --git a/docs/source/illustrations/lennard-jones-fluids.rst b/docs/source/illustrations/lennard-jones-fluids.rst
@@ -3,13 +3,13 @@
 Lennard-Jones fluid
 ===================
 
-MD system
----------
-
 .. container:: hatnote
 
    Measuring the NMR relaxation time from a Lennard-Jones fluid
 
+MD system
+---------
+
 .. image:: ../figures/illustrations/lennard-jones-fluid/snapshot-dark.png
     :class: only-dark
     :alt: LJ fluid simulated with LAMMPS - Dipolar NMR relaxation time calculation

diff --git a/docs/source/illustrations/lysozyme-in-water.rst b/docs/source/illustrations/lysozyme-in-water.rst
@@ -0,0 +1,36 @@
+.. _lysozyme-label:
+
+Lysozyme in water
+=================
+
+.. container:: hatnote
+
+   Measuring the NMR relaxation time from a hydrated lysozyme
+
+MD system
+---------
+
+.. image:: ../figures/illustrations/lysozyme-in-water/snapshot-dark.png
+    :class: only-dark
+    :alt: lysozyme in water simulated with GROMACS - Dipolar NMR relaxation time calculation
+    :width: 250
+    :align: right
+
+.. image:: ../figures/illustrations/lysozyme-in-water/snapshot-light.png
+    :class: only-light
+    :alt: lysozyme in water simulated with GROMACS - Dipolar NMR relaxation time calculation
+    :width: 250
+    :align: right
+
+.. container:: justify
+
+    The system is...
+
+.. container:: justify
+
+    You can access all the simulation files
+    and trajectories in this separate Github |repository-examples|.
+
+.. |repository-examples| raw:: html
+
+   <a href="https://github.com/simongravelle/nmrformd-data" target="_blank">repository</a>
diff --git a/docs/source/index.rst b/docs/source/index.rst
@@ -41,6 +41,7 @@ DNMR from MD
 
    illustrations/lennard-jones-fluids
    illustrations/bulk-water
+   illustrations/lysozyme-in-water
 
 .. toctree::
    :maxdepth: 2

diff --git a/nmrformd-data b/nmrformd-data