Ready for release 2.1.0. Updating website.

sizespectrum · Mar 21, 2021 · 5101cb2 · 5101cb2
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diff --git a/R/helpers.R b/R/helpers.R
@@ -8,5 +8,6 @@
 #' @return TRUE or FALSE
 #' @concept helper
 different <- function(a, b) {
-    !isTRUE(all.equal(a, b, check.attributes = FALSE, scale = 1, tolerance = 0))
+    !isTRUE(all.equal(a, b, check.attributes = FALSE, scale = 1, 
+                      tolerance = .Machine$double.eps))
 }
diff --git a/cran-comments.md b/cran-comments.md
@@ -1,16 +1,8 @@
-## Resubmission
-
-This is a resubmission. In this version I have added trailing slashes to two
-URLs in the README file.
-
 ## Test environments
 
-* ubuntu 18.04 bionic, R 4.0.2
-
-0 errors ✓ | 0 warnings ✓ | 1 note x
+* local ubuntu 18.04 bionic, R 4.0.3
 
-The note is not due to a problem in the package but due to a problem with
-the time server, see https://stackoverflow.com/questions/63613301/r-cmd-check-note-unable-to-verify-current-time
+0 errors ✓ | 0 warnings ✓ | 0 notes x
 
 * win-builder (devel, release and oldrelease)
   No Notes, Warnings or Errors
diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html
diff --git a/docs/articles/a_multispecies_model_of_the_north_sea.html b/docs/articles/a_multispecies_model_of_the_north_sea.html
diff --git a/...s/a_multispecies_model_of_the_north_sea_files/figure-html/plot_ns_biomass-1.png b/...s/a_multispecies_model_of_the_north_sea_files/figure-html/plot_ns_biomass-1.png
diff --git a/..._multispecies_model_of_the_north_sea_files/figure-html/plot_ns_indicators-1.png b/..._multispecies_model_of_the_north_sea_files/figure-html/plot_ns_indicators-1.png
diff --git a/.../a_multispecies_model_of_the_north_sea_files/figure-html/projected_ssb_ns-1.png b/.../a_multispecies_model_of_the_north_sea_files/figure-html/projected_ssb_ns-1.png
diff --git a/docs/articles/a_multispecies_model_of_the_north_sea_files/header-attrs-2.7/header-attrs.js b/docs/articles/a_multispecies_model_of_the_north_sea_files/header-attrs-2.7/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/community_model.html b/docs/articles/community_model.html
diff --git a/docs/articles/community_model_files/figure-html/plot_comm_biomass_sigma1-1.png b/docs/articles/community_model_files/figure-html/plot_comm_biomass_sigma1-1.png
diff --git a/docs/articles/community_model_files/figure-html/plot_relative_comm_abund-1.png b/docs/articles/community_model_files/figure-html/plot_relative_comm_abund-1.png
diff --git a/docs/articles/community_model_files/figure-html/print_plot_comm_fmort-1.png b/docs/articles/community_model_files/figure-html/print_plot_comm_fmort-1.png
diff --git a/docs/articles/community_model_files/figure-html/print_plot_comm_m2-1.png b/docs/articles/community_model_files/figure-html/print_plot_comm_m2-1.png
diff --git a/docs/articles/community_model_files/figure-html/print_plot_comm_sim-1.png b/docs/articles/community_model_files/figure-html/print_plot_comm_sim-1.png
diff --git a/docs/articles/community_model_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/community_model_files/figure-html/unnamed-chunk-4-1.png
diff --git a/docs/articles/community_model_files/header-attrs-2.7/header-attrs.js b/docs/articles/community_model_files/header-attrs-2.7/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/developer_FAQ.html b/docs/articles/developer_FAQ.html
diff --git a/docs/articles/developer_FAQ_files/header-attrs-2.7/header-attrs.js b/docs/articles/developer_FAQ_files/header-attrs-2.7/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/developer_vignette.html b/docs/articles/developer_vignette.html
diff --git a/docs/articles/developer_vignette_files/header-attrs-2.7/header-attrs.js b/docs/articles/developer_vignette_files/header-attrs-2.7/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});