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“suchapalaver” committed Sep 8, 2021
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Expand Up @@ -7,3 +7,11 @@ Run krust on the test data, searching for kmers of length 5, like this:
or, searching for kmers of length 21 across multiple records:

$ cargo run 21 cerevisae.pan.fa

On branches:

-main is the same as ParallelBridge
-ParallelBridge uses rayon's ParallelBridge (https://docs.rs/rayon/1.5.1/rayon/iter/trait.ParallelBridge.html)
-collect_the_iterator is able to use rayon by 'collecting' the rust-bio fasta Reader into a vector of Records
-std_threads uses Rust's standard library thread to achieve multithreadedness
-single-thread has no multithreaded processing

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