v0.0.8

What's Changed

• add link to google colab notebook by @LorenzLamm in #89
• fix logging :: TypeError: not all arguments converted during string formatting by @EricDeveaud in #91

New Contributors

• @EricDeveaud made their first contribution in #91

Full Changelog: v0.0.7...v0.0.8

v0.0.7

What's Changed

• filter mrcfile loading warnings by @LorenzLamm in #88

Full Changelog: v0.0.6...v0.0.7

v0.0.6

What's Changed

• update docs links by @LorenzLamm in #79
• Modify finetune function (#69) by @LorenzLamm in #83
• draw random crop from each patch by @LorenzLamm in #84
• On the fly data loading during training by @LorenzLamm in #85
• Benchmark metrics by @LorenzLamm in #86
• Logging statements by @LorenzLamm in #87

Full Changelog: v0.0.5...v0.0.6

v0.0.5

What's Changed

• fix tuple error by @LorenzLamm in #77

Full Changelog: v0.0.4...v0.0.5

v0.0.4

What's Changed

• fix numpy < 2.0.0 by @LorenzLamm in #72
• Update cli.py example segment command by @GenevieveBuckley in #73
• Update docs by @LorenzLamm in #75

New Contributors

• @GenevieveBuckley made their first contribution in #73

Full Changelog: 0.0.2...v0.0.4

v0.0.3

Full Changelog: 0.0.2...v0.0.3

v0.0.2

What's Changed

• Surface dice loss by @LorenzLamm in #45
• ci(dependabot): bump actions/checkout from 3 to 4 by @dependabot in #34
• ci(dependabot): bump styfle/cancel-workflow-action from 0.11.0 to 0.12.0 by @dependabot in #39
• ci(dependabot): bump actions/setup-python from 4 to 5 by @dependabot in #50
• ci(dependabot): bump styfle/cancel-workflow-action from 0.12.0 to 0.12.1 by @dependabot in #51
• ci(dependabot): bump codecov/codecov-action from 3 to 4 by @dependabot in #52
• fix docs deployment and get rid of warning during docs build by @alisterburt in #59
• add link to readme file by @LorenzLamm in #61
• add skeletonization code by @Hanyi11 in #65
• On the fly rescaling (GPU) by @LorenzLamm in #64

New Contributors

• @Hanyi11 made their first contribution in #65

Full Changelog: v0.0.1...v0.0.2

v0.0.1

What's Changed

• Add UNet by @kevinyamauchi in #1
• improve logging on Unet by @kevinyamauchi in #2
• fix indentation by @kevinyamauchi in #3
• Training adjustments by @LorenzLamm in #4
• Preprocessing by @LorenzLamm in #8
• docs template by @alisterburt in #9
• Add docs and CLI by @LorenzLamm in #11
• ci(dependabot): bump actions/setup-python from 3 to 4 by @dependabot in #13
• Training docs by @LorenzLamm in #14
• Training documentation by @LorenzLamm in #17
• Restructure packages by @LorenzLamm in #19
• Implement mixed precision for training and inference by @LorenzLamm in #20
• Pyto tomoloading by @LorenzLamm in #22
• Fix dataloading issues by @LorenzLamm in #28
• Connected components by @LorenzLamm in #25
• Adjust compatibility for ColabSeg by @LorenzLamm in #29
• Header issues by @LorenzLamm in #31
• Deconvolution as a preprocessing option by @rdrighetto in #32
• Misc features by @LorenzLamm in #36
• Fix lightning issue by @LorenzLamm in #41
• Add default arguments to components and threshold functions by @LorenzLamm in #42
• Fixed output filename formatting which assumed the extension was always 3 characters long by @rdrighetto in #43
• update CI for deployment by @LorenzLamm in #46
• remove 3.12 from test matrix by @LorenzLamm in #47
• Add twine config to release action in ci.yml by @LorenzLamm in #48

New Contributors

• @kevinyamauchi made their first contribution in #1
• @LorenzLamm made their first contribution in #4
• @alisterburt made their first contribution in #9
• @dependabot made their first contribution in #13
• @rdrighetto made their first contribution in #32

Full Changelog: https://github.com/teamtomo/membrain-seg/commits/v0.0.1