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1. flyest flyest Public

   Oxford Nanopore Technologies (ONT) long-read assembly polishing tool

   Shell 6

2. convict convict Public

   Copy Number Variant Quantification Tool

   Python 3

3. dviont dviont Public

   Variant calling pipeline designed for Q20+ ONT long-reads

   Perl 2

4. misc_scripts misc_scripts Public

   Miscellaneous scripts to be used locally or on HPC

   Python

5. outbreak_detection outbreak_detection Public

   Scripts that can be used to determine genetic relatedness using WGS data

   Python