Code

Hotfix native t2#236

Code

Merged

davidmeunier79 merged 44 commits intoMacatools:masterMacatools/macapype:masterfrom davidmeunier79:hotfix_native_T2davidmeunier79/macapype:hotfix_native_T2Copy head branch name to clipboardDec 21, 2023

+1,188-623

Commits

Commits on Nov 27, 2023

• outputnode native_T1 and T2 for SPM -> PNH_IRMTo3D + bug native_T2 was T1

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  3011ed7

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• cropped_to_native_trans

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  e2770b5

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Commits on Nov 28, 2023

• better gmwm surf

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  df3de08

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• create_native_old_segment_seg_pipe

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  6c2d642

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Commits on Nov 29, 2023

• replace all debaiased_mask by masked_debiased_T1 +use T2 for stereo

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  aa73d5f

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• rename_debiased_brain

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  4fbc928

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Commits on Nov 30, 2023

• stereo_debiased_T2

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  2fbac08

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• debias, 't1_debiased_file',

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  e56e3ce

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• debiased_to_stereo_trans

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  e04c14f

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• stereo_debiased_T1

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  59838fb

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• duplicate

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  e86b659

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• native T1

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  e477745

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• for ANTS

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  16599d4

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• pad_debiased_T2

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  7278902

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Commits on Dec 1, 2023

• pad stereo for ANTS no skull_strip

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  71545b7

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• stereo for pad_debiased_T1, pad_debiased_T2, pad_masked_debiased_T1, pad_masked_debiased_T2

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  2cd0c31

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• bug

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  a76914c

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• typo

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  0254bc3

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• debiased_to_stereo_trans

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  193bba6

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• stereo_debiased_T1

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  c2ba587

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• apply_stereo_masked

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  d9dc0c0

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• apply stereo to masked_debiased T1

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  e5b5bcb

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• masked_debiased_T2

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  c2cef83

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• typo

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  88446f8

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Commits on Dec 12, 2023

• no pad_masked_debias_T1 before brain_segment_pipe

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  584f40c

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• pad

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  3c4a87b

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Commits on Dec 13, 2023

• indiv if no ses

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  19d7b4f

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• and

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  4fc6ba4

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• print

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  306fffe

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• keys

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• keys

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  080d54a

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• ()

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  317a325

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• all

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  b3caf60

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• if all

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  4e6bb6e

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• bug

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  3c1b096

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• all

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  5c646a2

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• ses

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  a5d6e2e

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• back to previous but no modif if sessions is none

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  8585505

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• update_preparation_params

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  ac8ab01

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Commits on Dec 15, 2023

• bug if sub not in indiv

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  80619be

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Commits on Dec 19, 2023

• stereo_brain_mask

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  fa06ef6

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Commits on Dec 20, 2023

• removed pre_crop_z_t1 for native_T1 (pb for Ebdo)

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  db19601

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Commits on Dec 21, 2023

• if pad

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  48c0b67

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• flake8

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  54da897

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