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Hotfix native t2 #236

Merged
merged 44 commits into from
Dec 21, 2023
Merged

Hotfix native t2 #236

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3011ed7
outputnode native_T1 and T2 for SPM -> PNH_IRMTo3D + bug native_T2 wa…
davidmeunier79 Nov 27, 2023
e2770b5
cropped_to_native_trans
davidmeunier79 Nov 27, 2023
df3de08
better gmwm surf
davidmeunier79 Nov 28, 2023
6c2d642
create_native_old_segment_seg_pipe
davidmeunier79 Nov 28, 2023
aa73d5f
replace all debaiased_mask by masked_debiased_T1 +use T2 for stereo
davidmeunier79 Nov 29, 2023
4fbc928
rename_debiased_brain
davidmeunier79 Nov 29, 2023
2fbac08
stereo_debiased_T2
davidmeunier79 Nov 30, 2023
e56e3ce
debias, 't1_debiased_file',
davidmeunier79 Nov 30, 2023
e04c14f
debiased_to_stereo_trans
davidmeunier79 Nov 30, 2023
59838fb
stereo_debiased_T1
davidmeunier79 Nov 30, 2023
e86b659
duplicate
davidmeunier79 Nov 30, 2023
e477745
native T1
davidmeunier79 Nov 30, 2023
16599d4
for ANTS
davidmeunier79 Nov 30, 2023
7278902
pad_debiased_T2
davidmeunier79 Nov 30, 2023
71545b7
pad stereo for ANTS no skull_strip
davidmeunier79 Dec 1, 2023
2cd0c31
stereo for pad_debiased_T1, pad_debiased_T2, pad_masked_debiased_T1, …
davidmeunier79 Dec 1, 2023
a76914c
bug
davidmeunier79 Dec 1, 2023
0254bc3
typo
davidmeunier79 Dec 1, 2023
193bba6
debiased_to_stereo_trans
davidmeunier79 Dec 1, 2023
c2ba587
stereo_debiased_T1
davidmeunier79 Dec 1, 2023
d9dc0c0
apply_stereo_masked
davidmeunier79 Dec 1, 2023
e5b5bcb
apply stereo to masked_debiased T1
davidmeunier79 Dec 1, 2023
c2cef83
masked_debiased_T2
davidmeunier79 Dec 1, 2023
88446f8
typo
davidmeunier79 Dec 1, 2023
584f40c
no pad_masked_debias_T1 before brain_segment_pipe
davidmeunier79 Dec 12, 2023
3c4a87b
pad
davidmeunier79 Dec 12, 2023
19d7b4f
indiv if no ses
davidmeunier79 Dec 13, 2023
4fc6ba4
and
davidmeunier79 Dec 13, 2023
306fffe
print
davidmeunier79 Dec 13, 2023
c038815
keys
davidmeunier79 Dec 13, 2023
080d54a
keys
davidmeunier79 Dec 13, 2023
317a325
()
davidmeunier79 Dec 13, 2023
b3caf60
all
davidmeunier79 Dec 13, 2023
4e6bb6e
if all
davidmeunier79 Dec 13, 2023
3c1b096
bug
davidmeunier79 Dec 13, 2023
5c646a2
all
davidmeunier79 Dec 13, 2023
a5d6e2e
ses
davidmeunier79 Dec 13, 2023
8585505
back to previous but no modif if sessions is none
davidmeunier79 Dec 13, 2023
ac8ab01
update_preparation_params
davidmeunier79 Dec 13, 2023
80619be
bug if sub not in indiv
davidmeunier79 Dec 15, 2023
fa06ef6
stereo_brain_mask
davidmeunier79 Dec 19, 2023
db19601
removed pre_crop_z_t1 for native_T1 (pb for Ebdo)
davidmeunier79 Dec 20, 2023
48c0b67
if pad
davidmeunier79 Dec 21, 2023
54da897
flake8
davidmeunier79 Dec 21, 2023
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